View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2660_high_27 (Length: 301)
Name: NF2660_high_27
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 46413181 - 46413426
Alignment:
| Q |
21 |
cttagaacctcccattctcatcacgctatctcctattactttcacatttttacacaactcttactccactatcttcccttcctttcttgtccaaccctgt |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
46413181 |
cttagaacctcccattctcctcacgctatctcctattactttcacatttttacacaactcttactccactgccatcccttcctttcttgtccaaccctgt |
46413280 |
T |
|
| Q |
121 |
ctctttgccaaagaatttactctgctggaaaggcaagtaccacttgattacatcatctttttcgtctgacatggtcaactacttcaaatgcc----tcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
46413281 |
ctctttgccaaagaatttactctgctggaaaggcaagtaccacttgattacatcatctttttcgtctgacatggtcaactacttcaaatggctgtgtcca |
46413380 |
T |
|
| Q |
217 |
aataatctgatcaggggaataactgaaaattgattaggactttaaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46413381 |
aataatctgatcaggggaataactgaaaattgattaggactttaaa |
46413426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University