View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2660_high_29 (Length: 260)

Name: NF2660_high_29
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2660_high_29
NF2660_high_29
[»] chr4 (14 HSPs)
chr4 (22-241)||(3998853-3999077)
chr4 (92-241)||(4007933-4008082)
chr4 (95-229)||(4023094-4023228)
chr4 (92-232)||(3922006-3922146)
chr4 (22-82)||(4007844-4007904)
chr4 (92-229)||(3985015-3985152)
chr4 (100-199)||(3815697-3815796)
chr4 (126-232)||(3935354-3935460)
chr4 (99-227)||(3957470-3957598)
chr4 (97-199)||(3808120-3808222)
chr4 (137-194)||(4000217-4000274)
chr4 (92-152)||(4000136-4000196)
chr4 (122-199)||(3799920-3799997)
chr4 (122-194)||(4216867-4216939)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 3998853 - 3999077
Alignment:
Q  22 attgtactgatgttgaactcaatttgttcacaatgttggtagtcctcagcaaggatgaagcnnnnnnnnta-----tgatgtggagagatatcaataatc 116  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||         |     | ||||||||||||||||||||||    
T  3998853 attgtagtgatgttgaactcaatttgtgcacaatgttggtagtcctcagcaaggatgaagcaaaaaaaaaaaaaaattatgtggagagatatcaataatc 3998952  T
Q  117 atgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaaccaaacttatgtttgtaatcaa 216  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3998953 ctgtcatcctttgttgttttgtactccaacgactctgaaacactgcttcctggataaacatacaatgcttgataagaaccaaacttatgtttgtaatcaa 3999052  T
Q  217 cattactttcaacatagttatgttc 241  Q
    |||||||||||||||||||||||||    
T  3999053 cattactttcaacatagttatgttc 3999077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 4007933 - 4008082
Alignment:
Q  92 atgatgtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataa 191  Q
    ||||| |||| ||| ||||| |||||| ||||||| |||||||| |||| ||||| |||| | |||  | ||||||||||||||||| ||||||||||||    
T  4007933 atgatttggaaagagatcaacaatcatatcatcctgtgttgttttgtacgccaaccactcaggaacggtacttcctggatacacataaaatgcttgataa 4008032  T
Q  192 gaaccaaacttatgtttgtaatcaacattactttcaacatagttatgttc 241  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  4008033 gaaccaaacgtttgtttgtaatcaacattactttcaacatagttatgttc 4008082  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 4023094 - 4023228
Alignment:
Q  95 atgtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaa 194  Q
    ||||||||||| ||||| ||||||||||||||||||||| | |||||||||| |||||| || ||| ||||| ||||| ||||||| |||||||||||||    
T  4023094 atgtggagagagatcaacaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacatacactgcttgataagaa 4023193  T
Q  195 ccaaacttatgtttgtaatcaacattactttcaac 229  Q
     |||| |||| |||||||||||||| |||||||||    
T  4023194 tcaaagttatctttgtaatcaacataactttcaac 4023228  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 3922146 - 3922006
Alignment:
Q  92 atgatgtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataa 191  Q
    |||| ||||||||| ||||| ||||||| ||||| ||||||| | |||||||||| ||| || |||||| ||||| ||||||||||||| ||||||||||    
T  3922146 atgaagtggagagagatcaacaatcatgccatccattgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataa 3922047  T
Q  192 gaaccaaacttatgtttgtaatcaacattactttcaacata 232  Q
    ||| |||| |||| |||||||||||||| ||||||| ||||    
T  3922046 gaatcaaagttatctttgtaatcaacataactttcagcata 3922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 4007844 - 4007904
Alignment:
Q  22 attgtactgatgttgaactcaatttgttcacaatgttggtagtcctcagcaaggatgaagc 82  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4007844 attgtactgatgttgaactcaatttgttcacaatgttggtaatcctcagcaaggatgaagc 4007904  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 3985015 - 3985152
Alignment:
Q  92 atgatgtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataa 191  Q
    |||| |||| |||| ||||| |||||| |||| ||||||||| | |||||||||| |||||| |||||| ||||| ||||| ||||||| ||||||||||    
T  3985015 atgaggtggtgagagatcaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatatacatacactgcttgataa 3985114  T
Q  192 gaaccaaacttatgtttgtaatcaacattactttcaac 229  Q
    ||| |||   ||| ||||||||||||||  ||||||||    
T  3985115 gaatcaaggatatctttgtaatcaacatagctttcaac 3985152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 3815697 - 3815796
Alignment:
Q  100 gagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaaccaaa 199  Q
    |||||| |||||||||||| |||||||||||||| | |||||||||| |||||| || ||| ||||| ||||||||||||| ||||| || |||||||||    
T  3815697 gagagagatcaataatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacatacattgcttcatcagaaccaaa 3815796  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 3935460 - 3935354
Alignment:
Q  126 tttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaaccaaacttatgtttgtaatcaacattacttt 225  Q
    |||||||| | |||||| ||| | |||| |||||| ||||| | ||||||||||||||||||||||||| |||| |||| |||||||||||||| | |||    
T  3935460 tttgttgtcttgtactcaaaccaatctggaacactacttccagaatacacatacaatgcttgataagaatcaaagttatctttgtaatcaacataagttt 3935361  T
Q  226 caacata 232  Q
    |||||||    
T  3935360 caacata 3935354  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 3957598 - 3957470
Alignment:
Q  99 ggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaaccaa 198  Q
    ||||||| |||||||||||| ||||||| || |||   |||||  ||| |||||| |||||| ||||| ||||||| ||||| ||||||||||||| |||    
T  3957598 ggagagagatcaataatcatatcatcctgtgctgtcctgtacttgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaa 3957499  T
Q  199 acttatgtttgtaatcaacattactttca 227  Q
    | |||| |||||||||| |||| ||||||    
T  3957498 atttatctttgtaatcagcattgctttca 3957470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 3808120 - 3808222
Alignment:
Q  97 gtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaacc 196  Q
    ||||||||| ||||| |||| |||||||||||||||| | |||||| ||| |||||| |||| | ||||| ||||||||||||| ||||| || ||||||    
T  3808120 gtggagagagatcaacaatcttgtcatcctttgttgtcttgtactcaaaccactctggaacattacttccaggatacacatacattgcttcatcagaacc 3808219  T
Q  197 aaa 199  Q
    |||    
T  3808220 aaa 3808222  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 4000217 - 4000274
Alignment:
Q  137 gtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaa 194  Q
    |||||||||| |||||| |||||| ||||| ||||| |||||||||||||||||||||    
T  4000217 gtactccaaccactctggaacactacttccaggatatacatacaatgcttgataagaa 4000274  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 4000136 - 4000196
Alignment:
Q  92 atgatgtggagagatatcaataatcatgtcatcctttgttgtttggtactccaacgactct 152  Q
    |||| |||||||||||| || |||||||||||||| |||||| | |||||||||| |||||    
T  4000136 atgaagtggagagatattaacaatcatgtcatcctctgttgtcttgtactccaaccactct 4000196  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 3799920 - 3799997
Alignment:
Q  122 atcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaaccaaa 199  Q
    |||||||||||| | |||||||||| ||| || |||||| ||||| | ||| ||||||  ||||||||||||| ||||    
T  3799920 atcctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaagcaaa 3799997  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 4216867 - 4216939
Alignment:
Q  122 atcctttgttgtttggtactccaacgactctgaaacactgcttcctggatacacatacaatgcttgataagaa 194  Q
    |||||||||||| | |||||||||| ||| || |||||| ||||| | ||| ||||||  |||||||||||||    
T  4216867 atcctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa 4216939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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