View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_3 (Length: 897)
Name: NF2660_high_3
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 13 - 879
Target Start/End: Original strand, 49292549 - 49293410
Alignment:
| Q |
13 |
aatatgttgatcttgaaggaatcaaacttagtcaaaacctaattgaactatacaattaggaacttaacttatgctccatgttttagaaacatcaatcgca |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
49292549 |
aatatgtggatcttgaaggaatcaaacttagtcaaaacctaattgaactatacaattaggaacttaacttatgctccatgttttagcaccatcaatcgca |
49292648 |
T |
|
| Q |
113 |
aagtgcgatgagcaagaaagaacaatttatgggagactgcacacattggaccttgtcaactcaacatatcatgccataaaagggaaagctataagtcgaa |
212 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49292649 |
aagtgcgatgagcaagaaagaacattttatgggaggctgcacacattggaccttgtcaactcaacatatcatgccataaaagggaaagctataagtcgaa |
49292748 |
T |
|
| Q |
213 |
cgtggggcgccacacaccccttccatgagggaaaactaacacattgctcacccaaataaccaaggaaagttaaacagtatatgccacatcgtttggccaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49292749 |
cgtggggcgccacacaccccttccatgagggaaaactaacacattgctcacccaaataaccaaggaaggttaaacagtatatgccacatcgtttggccaa |
49292848 |
T |
|
| Q |
313 |
tacaattagttttgccgataaatactcatcttgtacaatgtttgaaacacacgattaatcaaatgtaagttgtctacgcaatattatccctttacttttt |
412 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49292849 |
tacgattagttttgccgataaatactcatcttgtacaatgtttgaaacacacgactaatcaaatgtaagttatctacgcaatattatccctttacttttt |
49292948 |
T |
|
| Q |
413 |
gtgattgtttatatttacaagtatttcttagtttagtagctaaaacctccnnnnnnngcacacattatttaacgctttactatagtaattaaggaactca |
512 |
Q |
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| T |
49292949 |
gtgattgtttatatttacatgtatttcttagtttagtagctaaaacccccaaaaaaagcacacattatttaacgctttaatatagtaatt-aggaactca |
49293047 |
T |
|
| Q |
513 |
tagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagtgaaggcctatcaacccatatatacctaggctaaatctctagt |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |
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| T |
49293048 |
tagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagttgaggactatcaaccc----atacctaggctaaatctctagt |
49293143 |
T |
|
| Q |
613 |
atgacaataaatttggcacccatgaaaatttcaattctccatatcaaaactatgtttggtgtatgcacttgagatcttaaaagagtcttggcattttggt |
712 |
Q |
| |
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| T |
49293144 |
atgacaataaatttggcacccatgaaaatttcaattctccatatcaaaactatgtttggtgtatgcacttgagatcttaaaagagtcttggcattttggt |
49293243 |
T |
|
| Q |
713 |
tgaactgtcgtcgtcaacttcaataaggtgatgccaacaaagactaaacaagccttcacaaacaataggaatgctaacatatgaaactcctcgtcgtgtt |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49293244 |
tgaactgtcgtcgtcaacttcaataaggtgatgccaacaaagactaaacaagccttcacaaacaataggaatgctaacatatgaaactcctcgtagtgtt |
49293343 |
T |
|
| Q |
813 |
catgaggaaccactagttaatccaaccaagccgctctagtagcaatgacaacacgtcttttatatta |
879 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49293344 |
tatgaggaaccactagttaatccaaccaagccgctctagtagcaatgacaacacgtcttttatatta |
49293410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 707
Target Start/End: Original strand, 17919358 - 17919413
Alignment:
| Q |
652 |
catatcaaaactatgtttggtgtatgcacttgagatcttaaaagagtcttggcatt |
707 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||| |
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| T |
17919358 |
catatcaagactatgtttggcgtatgcacttgagatctacaaagaatcttgtcatt |
17919413 |
T |
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