View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2660_high_35 (Length: 250)

Name: NF2660_high_35
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2660_high_35
NF2660_high_35
[»] chr4 (3 HSPs)
chr4 (129-218)||(55157691-55157780)
chr4 (161-218)||(48007185-48007242)
chr4 (165-218)||(24972155-24972208)
[»] chr5 (3 HSPs)
chr5 (139-218)||(38378858-38378938)
chr5 (136-190)||(38378290-38378344)
chr5 (137-218)||(7725589-7725668)
[»] chr7 (5 HSPs)
chr7 (1-60)||(4125412-4125471)
chr7 (161-218)||(4125561-4125618)
chr7 (129-218)||(44936050-44936138)
chr7 (165-218)||(10954486-10954539)
chr7 (173-218)||(28405207-28405252)
[»] chr1 (4 HSPs)
chr1 (136-218)||(52053743-52053824)
chr1 (156-219)||(13097060-13097123)
chr1 (136-199)||(17414806-17414869)
chr1 (136-218)||(18459472-18459554)
[»] chr3 (1 HSPs)
chr3 (136-214)||(34805828-34805906)
[»] chr2 (1 HSPs)
chr2 (129-179)||(32447971-32448021)
[»] chr8 (2 HSPs)
chr8 (161-218)||(10719523-10719580)
chr8 (161-197)||(23680594-23680630)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 55157691 - 55157780
Alignment:
Q  129 gaggcataagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||||||    
T  55157691 gaggcacaagttagatatacttgatgcccaagatacttgatgcccaagttagagatacttgaggcccaagacgatatcattgtataaata 55157780  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 48007242 - 48007185
Alignment:
Q  161 atacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||||    
T  48007242 atacttgatgcccaagttagagatacttgaggcctaagacaatatcattgtataaata 48007185  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 24972208 - 24972155
Alignment:
Q  165 ttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||| |||||||||||||| |||||  ||||| |||||||||| ||||||||    
T  24972208 ttgatgcccaagttagagatacttgaggtccaaggcaatatcattgtataaata 24972155  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 38378858 - 38378938
Alignment:
Q  139 ttagatatatttgatgcccaaaatacttgatgtccaagttagagat-atttgagacccaagacaatatcattatataaata 218  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||    
T  38378858 ttagagatacttgatgcccaaaatacttgatgtccaagttagagataactttagacccaagacaatatcattatataaata 38378938  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 38378290 - 38378344
Alignment:
Q  136 aagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttga 190  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38378290 aagttagagatatttgatgcccaaaatacttgatgttcaagttagagatacttga 38378344  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 7725589 - 7725668
Alignment:
Q  137 agttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    ||||||| |||||||||||| || |||||||| | |||||||||||||||||   ||| ||||||| |||||| ||||||||    
T  7725589 agttagagatatttgatgcctaagatacttgacgcccaagttagagatattt--tacctaagacaacatcattgtataaata 7725668  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4125412 - 4125471
Alignment:
Q  1 ttaacgcactatatcttcatgtacaaaattgataatttacaatgatatacaagcatcctt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  4125412 ttaacgcactatatcttcatgtacaaaattgataatttacaatgatataccatcatcctt 4125471  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 4125561 - 4125618
Alignment:
Q  161 atacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    ||||||||||||||||||||||||| ||||  || |||||||||||||| ||||||||    
T  4125561 atacttgatgtccaagttagagatacttgatgcctaagacaatatcattgtataaata 4125618  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 44936138 - 44936050
Alignment:
Q  129 gaggcataagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||| |||||||||||||| |||| |||| |||||||||| | |||||||||||| || ||  |||||||||||||||  ||||||||    
T  44936138 gaggcacaagttagatatatt-gatgtccaagatacttgatgcctaagttagagatacttaaggtccaagacaatatcatcgtataaata 44936050  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 10954486 - 10954539
Alignment:
Q  165 ttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||| ||||||||||||||  ||||||||||||||| |||||| ||||||||    
T  10954486 ttgatgcccaagttagagatacatgagacccaagacaacatcattgtataaata 10954539  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 28405252 - 28405207
Alignment:
Q  173 caagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||    
T  28405252 caagttagagataattgagacccaagacaacatcattgtataaata 28405207  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 52053824 - 52053743
Alignment:
Q  136 aagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||    
T  52053824 aagttagatatacttgatgttcaagatacttgatgtccaagttagagatacttgaggcccaaga-aatatcattgtataaata 52053743  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 13097060 - 13097123
Alignment:
Q  156 ccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaatat 219  Q
    |||| |||||||||| |||||||||||||| |||||  | |||||||||||||| |||||||||    
T  13097060 ccaagatacttgatgcccaagttagagatagttgaggtcgaagacaatatcattttataaatat 13097123  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 17414806 - 17414869
Alignment:
Q  136 aagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaaga 199  Q
    |||||| | ||| ||||||||||| ||||||||||  ||||||||||||| ||||| |||||||    
T  17414806 aagttaaagatacttgatgcccaagatacttgatgctcaagttagagatacttgaggcccaaga 17414869  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 18459554 - 18459472
Alignment:
Q  136 aagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    |||||| | ||| |||||| | || ||||||||||  ||||||||| ||| || || ||||||||||||||||| ||||||||    
T  18459554 aagttaaagatacttgatgtctaagatacttgatgctcaagttagaaatacttaaggcccaagacaatatcattgtataaata 18459472  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 34805828 - 34805906
Alignment:
Q  136 aagttagatatatttgatgcccaaaatacttgatgtccaagttagagatatttgagacccaagacaatatcattatata 214  Q
    |||||| | ||||||||||||||||||||||||||| |||||||||| || || || | |||||||| |||||| ||||    
T  34805828 aagttatagatatttgatgcccaaaatacttgatgttcaagttagagttacttaagtctcaagacaacatcattgtata 34805906  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 32447971 - 32448021
Alignment:
Q  129 gaggcataagttagatatatttgatgcccaaaatacttgatgtccaagtta 179  Q
    |||||| |||||||||||| |||||||| || |||||||||||||||||||    
T  32447971 gaggcacaagttagatatacttgatgccaaagatacttgatgtccaagtta 32448021  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 10719580 - 10719523
Alignment:
Q  161 atacttgatgtccaagttagagatatttgagacccaagacaatatcattatataaata 218  Q
    ||||||||||   |||||||||||| ||||| |||||||||| |||||| ||||||||    
T  10719580 atacttgatgcttaagttagagatacttgaggcccaagacaacatcattgtataaata 10719523  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 23680594 - 23680630
Alignment:
Q  161 atacttgatgtccaagttagagatatttgagacccaa 197  Q
    |||||||||| |||||||||||||||||||| |||||    
T  23680594 atacttgatgcccaagttagagatatttgaggcccaa 23680630  T

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