View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_4 (Length: 741)
Name: NF2660_high_4
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Complemental strand, 37776568 - 37775845
Alignment:
| Q |
1 |
acatattgtttctgattttccaaagaaaacatgaactgagattacaaaaatatactgctaaaaagtaaatgtaacaaaccttacatcttgtaacataagc |
100 |
Q |
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| T |
37776568 |
acataatgtttctgattttccaaagaaaacatgaactgagattaaaaaaatatactgctaaaaagtaaatgtaacaaaccttacatcttgtaacataagc |
37776469 |
T |
|
| Q |
101 |
atgtgcaacatctgcactatagttgagagtgaaaatgaatggctccattttattgtcaataaaaaattaacagcatccaaacaagacgaaaaacataatt |
200 |
Q |
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| T |
37776468 |
atgtgcaacatctgcaatatacttgagagtgaaaatgaatggctccattttattgtcaataaaaaattaacagcatccgaacaagacgaaaaacataatt |
37776369 |
T |
|
| Q |
201 |
ttcctacatgtccctcacaagaaaaatagattaacacctattgtctgatttaccaaagaaaacgtcaatttccctaaatgttgacaaatgttagcagata |
300 |
Q |
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| T |
37776368 |
ttcctacatgtccctcacaagaaaaatagattaacacctattgtctgatttaccaaagaaaacgtcaatttccataaatgttgacaaatattagcagata |
37776269 |
T |
|
| Q |
301 |
aattctgtagctcaggcttcaagcacctgacaccattcaatgcaatccttcgaccttcctccagcaatattttcccgaatgtaattgttgctttgtactt |
400 |
Q |
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| T |
37776268 |
aattatgtagctcaggcttcaagcacctgacagcat--aatgcaatccttcgaccttcctccagcaatattttcccgaatgtaattgttgctttgtactt |
37776171 |
T |
|
| Q |
401 |
ctttattaggacttgaaacatccactagactgatgctcatat--------------------tttcctttaaggggaacaagtgcagccacgggtgaggt |
480 |
Q |
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| T |
37776170 |
ctttattaggacttgaaacatctactagactgatgctcatattttcgtatataatgcataactttcctttaaggggaacaagtgcagccacgggtgaggt |
37776071 |
T |
|
| Q |
481 |
atgcaaatcaagtagtttgctatccataaacattctccatgaatccgtttctctgtcgtatacagtgagcttcaatctgtcccgagaatcaagtgcatat |
580 |
Q |
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| T |
37776070 |
atgcaaatcaagtagtttgctatccataaacattctccatgaatccgtttctctg--------------------tctgtcccgagaatcaagtgcatat |
37775991 |
T |
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| Q |
581 |
agttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggctccaagtatttgtttccggagaatatgcttcac |
680 |
Q |
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| T |
37775990 |
agttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggcttcaagtatttgtttctggagaatatgcttcac |
37775891 |
T |
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| Q |
681 |
atacgatattgtaattggacccaagtccattcaaaaaccatgttcc |
726 |
Q |
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| T |
37775890 |
atacgatattgtaattggacccaagtccattcaaaaaccatgttcc |
37775845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 253 - 440
Target Start/End: Complemental strand, 37780116 - 37779929
Alignment:
| Q |
253 |
ccaaagaaaacgtcaatttccctaaatgttgacaaatgttagcagataaattctgtagctcaggcttcaagcacctgacaccattcaatgcaatccttcg |
352 |
Q |
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||||||||| |||| ||||||||||| |||||| || || |||||||| || ||||||||||||||| | ||||||||| || ||| | | ||||| |
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| T |
37780116 |
ccaaagaaagcgtcgatttccctaaaagttgactaagattggcagataagttttgtagctcaggcttccaacacctgacagcaaacaaagttacccttca |
37780017 |
T |
|
| Q |
353 |
accttcctccagcaatattttcccgaatgtaattgttgctttgtacttctttattaggacttgaaacatccactagactgatgctcat |
440 |
Q |
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| | | ||||| |||||||||||| | ||||| || ||||| ||||| ||||||||||||||||||||| |||| ||| |||||||| |
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| T |
37780016 |
aaccttctccaacaatattttcccaattgtaagggtagctttctacttgtttattaggacttgaaacatcgactaaacttatgctcat |
37779929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 37781488 - 37781438
Alignment:
| Q |
252 |
accaaagaaaacgtcaatttccctaaatgttgacaaatgttagcagataaa |
302 |
Q |
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| T |
37781488 |
accaaagaaaacgtcaatttccttaaatgttaaccaatattagcagataaa |
37781438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 665
Target Start/End: Complemental strand, 37783164 - 37783069
Alignment:
| Q |
570 |
caagtgcatatagttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggctccaagtatttgtttccg |
665 |
Q |
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| T |
37783164 |
caagtgcatagagatgtccattcagtgaaatataaagcttatcacgccaaccatttaccattccactactaaccgggctctatgtatttgtttccg |
37783069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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