View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2660_high_5 (Length: 674)
Name: NF2660_high_5
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 11379467 - 11379886
Alignment:
| Q |
9 |
attatactactgtattaggaaggttaaatatatttttaatctttataaaatatatatctaatgagtttagtttctaaaacaattattgacacatatcaca |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11379467 |
attatactagtgtattaggaaggttaaatatatttttaatctttataaaatatatatctattaagtttagtttctaaaacagttattgacacat--caca |
11379564 |
T |
|
| Q |
109 |
ata---gtctatgtattgtgttagagtaaatatgtcaaa------------------tattttccaaaaaccaaacttatagcttttgcaaaatcacgat |
187 |
Q |
| |
|
||| ||| |||| |||||| | |||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||| | |
|
|
| T |
11379565 |
atactagtccatgttttgtgtcacggtaaatatgttaaaatcacgataatttattgttattttccagaaaccacatttatagcttttgcaaaatcacggt |
11379664 |
T |
|
| Q |
188 |
ggatcactgtaatatcaaagataatgcaagggagaagaacttacttccaccgttcaaacacatttccattctttttattctttcctgatccctgtaaaag |
287 |
Q |
| |
|
||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11379665 |
agattactatcataccaaagataatgcaagggagaagaacttacttccaccgttcaaacacatttccattctttttattctttcctgatccctgtaaaag |
11379764 |
T |
|
| Q |
288 |
tccaaattaaacaatcattctaattaaaaacatagctgcaatggcaatatatgaaaataatcannnnnnnactactgtataattgtttaggatttaattt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11379765 |
tccaaattaaacaatcattctaattaaaaacatagctgcaatggcaatatatgaaaataatca--tttttactaatgtataattgtttaggatttaattt |
11379862 |
T |
|
| Q |
388 |
gtagacatttcataaataataata |
411 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11379863 |
gtagacatttcataaataataata |
11379886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 519 - 658
Target Start/End: Original strand, 11382154 - 11382293
Alignment:
| Q |
519 |
gcacccaattaatatggcaatattagtaagataaggtttaaaagacaatacatattgtgcaagcacacaatttaagtcgagaatcgaattaagattcttt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11382154 |
gcacccaattaatatggcaatattagtaagataaggtttaaaagacaatacatattgtgcaagcacacaatttaagtcgagaatcgaattaagattcttt |
11382253 |
T |
|
| Q |
619 |
cgaacaatttgtaaggagatccatcccaatcacttggtta |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11382254 |
cgaacaatttgtaaggagatccatcccaatcacttggtta |
11382293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 11382038 - 11382104
Alignment:
| Q |
403 |
ataataatactaccttacatcctggacattcgatggctcctttgccttcgcaacttttacaactttt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
11382038 |
ataataatactaccttacatcctggacattcgatggcccctttgccttcgcaacttttacagctttt |
11382104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University