View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2660_high_6 (Length: 665)

Name: NF2660_high_6
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2660_high_6
NF2660_high_6
[»] chr2 (1 HSPs)
chr2 (18-656)||(31849877-31850510)


Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 656
Target Start/End: Complemental strand, 31850510 - 31849877
Alignment:
Q  18 gtatatactaaaaacgttttaagccagcaaggtcaaagtcacatatagaagtgaaccattcttcgaggattgatgtgaatcatagatagataagacttca 117  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  31850510 gtatataccaaaaacgttttaagccagcaaggtcaaagtcatatatagaagtgaaccattcttcgaggattgatgtgaatcatagata----agacttca 31850415  T
Q  118 atcgaggtacatatatactcacacatccatcaatttgtacattaaccttagcaagtagcaactcatagtcatacacatttatacaatcaaccttgagact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31850414 atcgaggtacatatatactcacacatccatcaatttgtacattaaccttagcaagtagcaactcatagtcatacacatttatacaatcaaccttgagact 31850315  T
Q  218 ttctcatttgtcttttttgtcaaacataaatttggtaacacaaatattttattttcattcaatacataaaaaa-gtacacatagtggcatcaatagtata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31850314 ttctcatttgtcttttttgtcaaacataaatttggtaacacaaatattttattttcattcaatacataaaaaaagtacacatagtggcatcaatagtata 31850215  T
Q  317 ggctagtactaatgatacaacaaatgtatactttataattaatgtctaaaaaatttaagcatatgagtggcatagacggcacgtccaagtaatagtagta 416  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  31850214 ggctagtactaatgatacaacaaatgtatgctttataattaatgtctaaaaaatttaagcat--gagtggcatagacggcacgtccaagtaatagtagta 31850117  T
Q  417 actactgctattttggctatataacctaagaaaatggaatccatgtttggaattttattcaagaatcttattggcttttgagtcttttaataaaccatgg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31850116 actactgctattttggctatataacctaagaaaatggaatccatgtttggaattttattcaagaatcttattggcttttgagtcttttaataaaccatgg 31850017  T
Q  517 ttaaatttagaaggatcttttgactatctagcctttactgaacaaacttaccgttaactagatttgagacaaggacaaagaagaaaccatgttgtaatgg 616  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  31850016 ttaaatttagaaggatcttttggctttctagcctttactgaacaaacttaccgttaactagatttgagacaaggacaaggaagaaaccatgttgtgatgg 31849917  T
Q  617 tatcttaactagtctttccttatttctttgtcagaataat 656  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  31849916 tatcttaactagtctttccttatttctttgtcagagtaat 31849877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University