View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_7 (Length: 652)
Name: NF2660_high_7
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_7 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 19 - 644
Target Start/End: Original strand, 8151748 - 8152369
Alignment:
| Q |
19 |
aaagacccatttagtgctaataatcgagtgatcttgagatcgtggaactaagtctcatgccttgtttctttcaaattgattgaattcttcttgcatagca |
118 |
Q |
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| T |
8151748 |
aaagacccatttagtgctaataatcgagtgatcttgagaccgtggaactaagtctcatgccttgtttctttcaaattgattgaattcttcttgcatagca |
8151847 |
T |
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| Q |
119 |
ataatccacccttcatcgattattgcctctttaatggatttgtgttaaatttattatatgaaagcagaaaaatcacaaaaattacttacgtagtctatcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8151848 |
ataatccacccttcatcgattattgcctctttaatggatttgtgttaaatttattatatgaaagcagaaaaatcacaaaaattacttacgtggtctatcc |
8151947 |
T |
|
| Q |
219 |
ttgccattatttagaataaaacatttgcatccgaaaattttaagatatgataaatttggcttccttcacttaaatagttcatatggtgtcttttcttttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8151948 |
ttgccattatttagaataaaacatttgcatccgaaaattttaagatatgataaatttggcttccttcacttaaatagttcatatggtgtcttttcttttt |
8152047 |
T |
|
| Q |
319 |
gaaccctcaaagacaaaaagtctaggaggcaactattgtggatttgtcattgttgatcactactctagattcacatatggacatggttattatctagtaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8152048 |
gaaccctcaaagacaaaaagtctaggaggcaactattgtggatttgtcattgttgatcactactctagattcacatatggacatggttattatctagtaa |
8152147 |
T |
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| Q |
419 |
ggatgagtcatgagacctttgatgcttttgatagatttgcaaagcttatccaaaaccaaaattctttgaaaattacatacaccttaacaaataaaatggt |
518 |
Q |
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| T |
8152148 |
ggatgagtcatgagacctttgatgcttttgatagatttgcaaagcttatccaaaaccaaaattctttgaaaattacatacacctcaac----aaaatggt |
8152243 |
T |
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| Q |
519 |
gttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcctaaacacttgtagaccgatgcgattaacaccg |
618 |
Q |
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| T |
8152244 |
gttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcctaaacacttttagaccgatgcgattaacaccg |
8152343 |
T |
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| Q |
619 |
catatcatgtcttacatagtataatc |
644 |
Q |
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| T |
8152344 |
catatcatgtcttacatagaataatc |
8152369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 492
Target Start/End: Original strand, 7373 - 7532
Alignment:
| Q |
324 |
ctcaaagacaaaaagtctaggaggcaactattgtggatttgtcattgttgatcactactctagattcacatatggacatggttattatctagtaaggatg |
423 |
Q |
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||||| ||||||||| ||| ||| |||||||| ||||||| ||||||| ||| |||||| ||| | |||| |||||| ||| | |||||||||||||| |
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| T |
7373 |
ctcaaggacaaaaagcctaagagacaactattatggatttctcattgtcgatgactacttgagaattacat--ggacattgttctaatctagtaaggatg |
7470 |
T |
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| Q |
424 |
agtcatgagacctttgatgcttttgatagatttgcaaagcttatccaaaaccaaaattctttgaaaatt |
492 |
Q |
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| T |
7471 |
ac-------acctttgatacttttgctagatttgccaaagttattcaaaaccaaaattctttgaaaatt |
7532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 355184 - 355102
Alignment:
| Q |
312 |
tctttttgaaccctcaaagacaaaaagtctaggaggcaactattgtggatttgtcattgttgatcactactctagattcacat |
394 |
Q |
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| T |
355184 |
tctttttggtcccttaaagacaaaacgcctatgaggcaactattacggatttgtcattgttgatgactactatagattcacat |
355102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 19003666 - 19003764
Alignment:
| Q |
209 |
tagtctatccttgccattatttagaataaaacatttgcatccgaaaattttaagatatgataaatttggcttccttcacttaaatagttcatatggtgt |
307 |
Q |
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|||| ||||||| |||||||||| |||| ||||||||||||| || | | |||||||| || ||||||||||||| ||||| ||||||||| ||||| |
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| T |
19003666 |
tagtttatcctttccattatttaaaatagaacatttgcatccaaacactcctagatatgacaagtttggcttccttcccttaagtagttcataaggtgt |
19003764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 589
Target Start/End: Original strand, 19777066 - 19777144
Alignment:
| Q |
511 |
aaaatggtgttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcctaa |
589 |
Q |
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| T |
19777066 |
aaaatggtgtgtttgaaaggaaaaatagagttttggaggaattagctagaactatgataaatgaaatgaacctccctaa |
19777144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 589
Target Start/End: Complemental strand, 20578236 - 20578158
Alignment:
| Q |
511 |
aaaatggtgttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcctaa |
589 |
Q |
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| T |
20578236 |
aaaatggtgttgttgaaaggaaaaatagagttttggaggagctagctagggctatgataaatgaaatgaacctccctaa |
20578158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 20578035 - 20578084
Alignment:
| Q |
261 |
agatatgataaatttggcttccttcacttaaatagttcatatggtgtctt |
310 |
Q |
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| T |
20578035 |
agatgtgataagtttggcttccttcccttaagtagttcatagggtgtctt |
20578084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 586
Target Start/End: Complemental strand, 62371 - 62293
Alignment:
| Q |
508 |
aataaaatggtgttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcc |
586 |
Q |
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| T |
62371 |
aataaaatggtgttgttgaaagaaagaataaaatcttggaggagctagctaggaccatgattaatgaaatgaaccttcc |
62293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 589
Target Start/End: Original strand, 22606467 - 22606537
Alignment:
| Q |
519 |
gttgttgaaagaaaaaattgagttttggaagagtttgttagaaccatgataagtgaaatgaaccttcctaa |
589 |
Q |
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| T |
22606467 |
gttgttgaaagaaagaatagatttttgatagagttagctaggaccatgataaatgaaatgaatcttcctaa |
22606537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 18580407 - 18580456
Alignment:
| Q |
261 |
agatatgataaatttggcttccttcacttaaatagttcatatggtgtctt |
310 |
Q |
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||||||||||| |||||||| |||| |||| |||||||||||||||||| |
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| T |
18580407 |
agatatgataagtttggctttcttcctttaagtagttcatatggtgtctt |
18580456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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