View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_8 (Length: 648)
Name: NF2660_high_8
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 38109786 - 38110336
Alignment:
| Q |
16 |
ataacagtgatagatataaatacgtatttcatactactttcgtccttaaatataaaacttactccatgtatactaccaccaaagtaatattaaatttgtc |
115 |
Q |
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| T |
38109786 |
ataacagtgatagatataaatacgtatttcatactactttcatccttaaatataaaacttactccatgtatactaccaccaaagtaatattaaatttgtc |
38109885 |
T |
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| Q |
116 |
gataatcaatgttatgttacatgtttactcttaagatagaaagagagaattaatttatatttccattgcaacatttgttacaagttgtagaaaaatataa |
215 |
Q |
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| T |
38109886 |
gataatcaatgttatgttacgtgtttactcttaagatagaaagagagaattaatttatatttccattgcaacatttgtcacaagttgtagaaaaatataa |
38109985 |
T |
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| Q |
216 |
tcatgttagaaataatgaattcatt------taaaaatttgaatgtggacttgtaaatgacattaaatttaatattatattggtggtttaaggttttgat |
309 |
Q |
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| T |
38109986 |
tcatgttagaaataatgaattcatttaaaaataaaaatttgaatgtggacttgtaaatgacattaaatttaatattatattggtggtttaaggttttgat |
38110085 |
T |
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| Q |
310 |
gtatatatt-aaaaaatactaacaaaatttaaactaaattatttacttttctcaatcatgatttttgtatattccataaggtgtacttttaactagtcgt |
408 |
Q |
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| T |
38110086 |
gtatatattaaaaaaatactaaca-----------aaattatttacttttctcaatcatgatttttgtatattccataaggtgtacttttaactagtcgt |
38110174 |
T |
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| Q |
409 |
gcatctatattatacgtttatttggcttaatgaagtgtatatttttaatgcaattttactacaaatatcttgaagnnnnnnnngtaaaattaaaacataa |
508 |
Q |
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| T |
38110175 |
gcatctatattatacgtttatttggcttaatgaagtgtatatttttaatgcaattttactacaaatatcttgaagaaaaaaaagtaaaattaaaacataa |
38110274 |
T |
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| Q |
509 |
tcttacttgttttaaggtataatggcaaaattgcttgaattatatctttattttctaaaata |
570 |
Q |
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| T |
38110275 |
tcttacttgttttaaggtataatggcaaaattggttgaattatatctttattttctaaaata |
38110336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 565 - 631
Target Start/End: Original strand, 38110377 - 38110443
Alignment:
| Q |
565 |
aaaatataaatacatagataattccttaggcaggttaaggttgagaaagacacacacatgtaagagt |
631 |
Q |
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| T |
38110377 |
aaaatttaaatacatagataattccttacgcatgttaaggttgagaaagagacacagatgaaagagt |
38110443 |
T |
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