View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_15 (Length: 511)
Name: NF2660_low_15
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 44691992 - 44691504
Alignment:
| Q |
18 |
acaaagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaatttgagaacaatgcacgcagtatcatagagtactgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
44691992 |
acaaagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaattttagaacaatgcacggagtatcatagagtactgaa |
44691893 |
T |
|
| Q |
118 |
agtggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44691892 |
agtggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgatacctaataaaaattatcctggc |
44691793 |
T |
|
| Q |
218 |
catagagaaagtatatccaagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggt |
317 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||| | ||||||||||||| |
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| T |
44691792 |
caaagagaaagtatatccatgtgattgataagcatggaatggcatgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggt |
44691693 |
T |
|
| Q |
318 |
ctcacatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcacc |
417 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44691692 |
ctcacatttgatatccaattgttgaacccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcacc |
44691593 |
T |
|
| Q |
418 |
ttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
506 |
Q |
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| T |
44691592 |
ttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaatattccccattttcttttcact |
44691504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 135 - 506
Target Start/End: Complemental strand, 44682193 - 44681830
Alignment:
| Q |
135 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
234 |
Q |
| |
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||||||||||||||| ||||||||| | | || ||||||| |||||||| |||||||||||| |||| || || ||||| |||| | ||||||||| | |
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| T |
44682193 |
aaagagataaccatatttaagaaaacacaaagaaatcaaattaacatagtaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44682097 |
T |
|
| Q |
235 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
334 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||| |
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| T |
44682096 |
-atgttattgataagcatggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatcca |
44682002 |
T |
|
| Q |
335 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
434 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44682001 |
attgttgtacccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44681902 |
T |
|
| Q |
435 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44681901 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44681830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 135 - 506
Target Start/End: Complemental strand, 44653179 - 44652816
Alignment:
| Q |
135 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
234 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||| |||| || || ||||| |||| | ||||||||| | |
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|
| T |
44653179 |
aaagagataaccatatttaagaaaacacaaaggaatcaaattaacatagcaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44653083 |
T |
|
| Q |
235 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
334 |
Q |
| |
|
| || |||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44653082 |
-atgttattggtaagcatggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatcca |
44652988 |
T |
|
| Q |
335 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
434 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44652987 |
attgttgtacccgaagagagagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44652888 |
T |
|
| Q |
435 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
44652887 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44652816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 496
Target Start/End: Complemental strand, 44631713 - 44631338
Alignment:
| Q |
134 |
gaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaatta--------tcctggccatagaga |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||| || || |
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|
| T |
44631713 |
gaaagagataaccatagttaagaaaacatatagaaatcaaaataacatagcaccaggatgacacctaataaaaatgaaaataaaatcctagccagagcga |
44631614 |
T |
|
| Q |
226 |
aagtatatccaagtgattga--------taagcat--ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttg |
315 |
Q |
| |
|
|||||||| | || ||||| || |||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |
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|
| T |
44631613 |
aagtatat--atgttattgacttattggtatgcataaggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttg |
44631519 |
T |
|
| Q |
316 |
gtctcacatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagca |
415 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44631518 |
gtctcacattttatatccaattgttgtagccgaagggagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagca |
44631419 |
T |
|
| Q |
416 |
ccttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattt |
496 |
Q |
| |
|
||| ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44631418 |
cctcttcaaattttccaaaaccttctctcatagccaccgtagactgatcaacttgcacgcaacacaaaagattccccattt |
44631338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 243 - 500
Target Start/End: Original strand, 44637251 - 44637508
Alignment:
| Q |
243 |
tgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgt |
342 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
44637251 |
tgataatcatggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgt |
44637350 |
T |
|
| Q |
343 |
agccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctt |
442 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |
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|
| T |
44637351 |
agccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctt |
44637450 |
T |
|
| Q |
443 |
tcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttctt |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
44637451 |
tcatagccactgtagattgatcaacttgcacacaacacaaaagattccccattttctt |
44637508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 44637050 - 44637114
Alignment:
| Q |
16 |
tcacaaagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaa |
80 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
44637050 |
tcacaaagacattatcctacaagcaaataaatattaaaccaatcaacattaattcattggaaaaa |
44637114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 44631849 - 44631785
Alignment:
| Q |
18 |
acaaagacattatcctgcaagcaaataaatatt-aaacaaatcaacatttattccatggaaaaat |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||| |||| || ||||||| |
|
|
| T |
44631849 |
acaaagacattatcctgcaagcaaataaatattaaaaccaatcaacattaattcaatcgaaaaat |
44631785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 17531170 - 17531232
Alignment:
| Q |
18 |
acaaagacattatcctgcaagcaaataaatattaaacaaatcaacatttattccatggaaaaa |
80 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| | ||||| || |||| ||||||||| |
|
|
| T |
17531170 |
acaaatacattatcctgcaagcaaataaatattaaaccagtcaaccttaattcaatggaaaaa |
17531232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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