View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_17 (Length: 479)
Name: NF2660_low_17
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 23863184 - 23862737
Alignment:
| Q |
14 |
atatcaacaataaattagttagtggtaagagacttgaaccccttatgtaagtggacaggggttcgatcttcgatttttgcgtatggagaaaattagatgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23863184 |
atatcaacaataaattagttagtggtaagagacttgaatcccttatgtaagtggacaggggttcgatcttcgatttttgcgtatggaaaaaattagatgg |
23863085 |
T |
|
| Q |
114 |
agaagagaaaacccaccttgcgttcctcacaaattctttgacgaggaatagtcatcgataaacaatggtcgaaagtttgtaccaataacatggcaatcga |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23863084 |
agaagagaaaacccaccttgtgttcctcacaaattctttgacgaggaatagtcatcgataaacaatggtggaaagtttgtaccaataacatggcaatcga |
23862985 |
T |
|
| Q |
214 |
aaaacaatatagacatgttgaagtgatgatgatcaatatatggttgaagacattaataccattaatcatttgtacgtttttaatagtagatgaatggatg |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23862984 |
aaaacaatatagacatgttgaagcgatgatgatcaatatagggttgaagacattaatacgattaatcatttgtacgtttttaatagtagatgaatggatg |
23862885 |
T |
|
| Q |
314 |
aaagttattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaatt |
413 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23862884 |
aaagttattgcatagtgaagacattagtgatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaatt |
23862785 |
T |
|
| Q |
414 |
agagtgattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
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| T |
23862784 |
agagtgattgttagtatatagttagtgtagcatagttcctatagtatt |
23862737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 18473871 - 18474014
Alignment:
| Q |
319 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttaca-tttgcctaactgaattagag |
417 |
Q |
| |
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|||||||||||||||| |||| | || |||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||| | ||| || ||||| |
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| T |
18473871 |
tattgcatagtgaagagattagtgataataaataatagttatagagataacttgttatacaagtgatcagttagttacactttacataattgtattagga |
18473970 |
T |
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| Q |
418 |
tgattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
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| T |
18473971 |
ttattgttagaatacagttagtataggatagttgctatagtatt |
18474014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 18478441 - 18478584
Alignment:
| Q |
319 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttaca-tttgcctaactgaattagag |
417 |
Q |
| |
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|||||||||||||| | |||| | || ||||||| ||| |||| |||||||||| ||||||||||||||||||||||| ||| | ||| | |||| | |
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| T |
18478441 |
tattgcatagtgaaaatattagtgataataaatcttagttataaagataacttgcaatacaagttatcagttagttacactttacataattattttaggg |
18478540 |
T |
|
| Q |
418 |
tgattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
| |
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| ||| |||| ||| |||||||||| |||||| |||||||||| |
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| T |
18478541 |
ttattcttagaatacggttagtgtaggatagttgctatagtatt |
18478584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 319 - 461
Target Start/End: Complemental strand, 35268204 - 35268062
Alignment:
| Q |
319 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagt |
418 |
Q |
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|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
35268204 |
tattgcatagttaagacattagtgatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttacctaactgtattagagt |
35268105 |
T |
|
| Q |
419 |
gattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
| |
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| |||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
35268104 |
gtttgttaatatacagttagtgtagcatagttcctattgtatt |
35268062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 319 - 461
Target Start/End: Complemental strand, 35571798 - 35571659
Alignment:
| Q |
319 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagt |
418 |
Q |
| |
|
||||||||| ||||||||||| | || |||||||||||||||| ||||||| || ||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
35571798 |
tattgcataatgaagacattagtgataataaatcctagatatatagataacctg---tacaaattatcagttagttacatttacctaactgtattagagt |
35571702 |
T |
|
| Q |
419 |
gattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35571701 |
gattgttagcatatagttagtgtagcatagttcctatagtatt |
35571659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 461
Target Start/End: Complemental strand, 9801606 - 9801463
Alignment:
| Q |
319 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacat-ttgcctaactgaattagag |
417 |
Q |
| |
|
|||||||||||||||| || | | || | ||||| ||| |||||||||||||| ||| ||||||||||||||||||| | || | |||||| ||||| |
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| T |
9801606 |
tattgcatagtgaagagatcagtgataacaaatcatagtcatagagataacttgctatgcaagttatcagttagttacttcttacataactgtattagga |
9801507 |
T |
|
| Q |
418 |
tgattgttagcatatagttagtgtagcatagttcctatagtatt |
461 |
Q |
| |
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|||||||| ||| ||||||| ||| ||||| |||||||||| |
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| T |
9801506 |
atattgttagaatacagttagtataggttagttactatagtatt |
9801463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 5456400 - 5456461
Alignment:
| Q |
36 |
tggtaagagacttgaaccccttatgtaagtggacaggggttcgatcttcgatttttgcgtat |
97 |
Q |
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||||||||||||||||||| |||| ||||||| || ||||| |||||| |||| ||| |||| |
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| T |
5456400 |
tggtaagagacttgaaccctttatataagtggccaagggtttgatctttgattcttgtgtat |
5456461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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