View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_18 (Length: 460)
Name: NF2660_low_18
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1197233 - 1196780
Alignment:
| Q |
1 |
ccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatcatcaaacaacaatggttc |
100 |
Q |
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| T |
1197233 |
ccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatcatcaaacaacaatggttc |
1197134 |
T |
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| Q |
101 |
tgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttg |
200 |
Q |
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| T |
1197133 |
tgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttg |
1197034 |
T |
|
| Q |
201 |
agagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaagatc |
300 |
Q |
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| T |
1197033 |
agagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaagatc |
1196934 |
T |
|
| Q |
301 |
atggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttagaaaatcaacttgcttgttc |
400 |
Q |
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| T |
1196933 |
atggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttagaaaatcaacttgcttgttc |
1196834 |
T |
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| Q |
401 |
tcatcatcctcaaagtccattgtgtagataaatataataattaatattcttgga |
454 |
Q |
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| T |
1196833 |
tcatcatcctcaaagtccattgtgtagataaatataataattaatattattgga |
1196780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 7289350 - 7289790
Alignment:
| Q |
5 |
caccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatcatcaaacaacaatggttctgtt |
104 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||| |
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| T |
7289350 |
caccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatcatcaaagaacaatggttatgtc |
7289449 |
T |
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| Q |
105 |
ccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcatcaagcttttcagattcttttga |
201 |
Q |
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| T |
7289450 |
ctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcatcaagcttttcagattcttttga |
7289549 |
T |
|
| Q |
202 |
gagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaagatca |
301 |
Q |
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| T |
7289550 |
gagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgtattttgaagatggttgaagatca |
7289649 |
T |
|
| Q |
302 |
tggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttctttagaaaatcaacttgcttgttct |
401 |
Q |
| |
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||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||| | ||||||| |
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| T |
7289650 |
tggaaagaataagga-tagtgttcaaa-caagaatgtagatcaattggcattgaagaaatgatgagttattgttctttagaaaattaactcgtttgttct |
7289747 |
T |
|
| Q |
402 |
catcatcctcaaagtccattgtgtagataaatataataattaa |
444 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289748 |
catcatcctcaaagtccattgtgtagataaatataataattaa |
7289790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 297
Target Start/End: Original strand, 50471139 - 50471318
Alignment:
| Q |
118 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
217 |
Q |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||| |
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| T |
50471139 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaaga |
50471238 |
T |
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| Q |
218 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
297 |
Q |
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|||||||||| ||||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
50471239 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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