View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2660_low_24 (Length: 327)

Name: NF2660_low_24
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2660_low_24
NF2660_low_24
[»] chr4 (8 HSPs)
chr4 (17-242)||(28146785-28147014)
chr4 (16-216)||(25967825-25968032)
chr4 (17-242)||(55606384-55606600)
chr4 (17-240)||(38412007-38412227)
chr4 (17-239)||(11440396-11440620)
chr4 (20-117)||(13198221-13198317)
chr4 (50-126)||(46308490-46308565)
chr4 (17-176)||(30839653-30839812)
[»] chr5 (10 HSPs)
chr5 (17-242)||(19967310-19967537)
chr5 (17-220)||(36491323-36491526)
chr5 (25-214)||(41283320-41283515)
chr5 (17-82)||(22927204-22927269)
chr5 (17-84)||(16341552-16341621)
chr5 (91-243)||(39426464-39426614)
chr5 (17-77)||(13424774-13424834)
chr5 (21-77)||(39426232-39426288)
chr5 (166-244)||(13424880-13424958)
chr5 (21-145)||(20141691-20141814)
[»] chr1 (10 HSPs)
chr1 (17-240)||(32617707-32617930)
chr1 (12-239)||(12990144-12990374)
chr1 (14-111)||(9457554-9457652)
chr1 (14-111)||(9461651-9461749)
chr1 (117-216)||(9457470-9457570)
chr1 (117-216)||(9461567-9461667)
chr1 (17-152)||(14081840-14081977)
chr1 (18-82)||(34664745-34664809)
chr1 (17-58)||(24699934-24699975)
chr1 (135-242)||(35811729-35811835)
[»] chr7 (4 HSPs)
chr7 (21-216)||(25636046-25636241)
chr7 (17-111)||(47363841-47363936)
chr7 (166-243)||(47363960-47364036)
chr7 (17-198)||(10493548-10493730)
[»] chr2 (8 HSPs)
chr2 (14-243)||(35016516-35016753)
chr2 (17-160)||(19263659-19263803)
chr2 (17-111)||(37794789-37794884)
chr2 (121-244)||(17989209-17989333)
chr2 (17-111)||(17989125-17989221)
chr2 (20-163)||(5428526-5428669)
chr2 (179-241)||(20929783-20929845)
chr2 (100-161)||(31806161-31806222)
[»] chr6 (4 HSPs)
chr6 (56-242)||(8169126-8169312)
chr6 (17-163)||(32296249-32296395)
chr6 (17-67)||(9177570-9177620)
chr6 (29-91)||(10117121-10117183)
[»] chr8 (6 HSPs)
chr8 (17-92)||(23490107-23490182)
chr8 (137-215)||(23490207-23490286)
chr8 (118-215)||(10473867-10473968)
chr8 (137-196)||(773692-773752)
chr8 (17-75)||(7154407-7154465)
chr8 (182-242)||(14867560-14867620)
[»] chr3 (4 HSPs)
chr3 (18-240)||(7298926-7299138)
chr3 (17-132)||(11783545-11783659)
chr3 (17-80)||(19596577-19596639)
chr3 (137-203)||(50263002-50263069)
[»] scaffold0989 (1 HSPs)
scaffold0989 (157-238)||(2084-2165)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 28147014 - 28146785
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggc---aattttttgcagccgtaatggtgtttcat 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||     |||||||| ||||||| |||||||| |    
T  28147014 aaaaatatgattttcatctatctcaattgaaaaaatatccagattctatgtctattgtcatgaacggccttttttttttgcggccgtaacggtgtttcgt 28146915  T
Q  114 catggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggccttttt 212  Q
    |   ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  28146914 cgcagctgtaacgacgttttgtcgtgatttttgttcactctgtaaaaacggtgaaaaacggtaatgtccgctacctatacctttttgttgcggccttttt 28146815  T
Q  213 ctcgataatttactgttttttaaaaccttg 242  Q
    |||  |||   || ||||||||||||||||    
T  28146814 ctccgtaacagaccgttttttaaaaccttg 28146785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 25968032 - 25967825
Alignment:
Q  16 caaaaatatgattttcatctatctcaattgaaaaaa--tatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcat 113  Q
    ||||||||||||| |||||||| |||||||||||||  |||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||||| |    
T  25968032 caaaaatatgattatcatctatatcaattgaaaaaaaatatccgaattctatgtctgttgtcatgaatggcaattttttgcagccgtaacggtgtttcgt 25967933  T
Q  114 catggctgtaacggcgttttgttgtgatttttgttcact-----tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcct 208  Q
    |  || ||||||||| ||| || ||||||||||||||||     ||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||    
T  25967932 cgcggttgtaacggcatttcgtcgtgatttttgttcactctgtatgtaaaaacggtggaaaacggtaacgtccgctacctatacctttttgtcgcagcct 25967833  T
Q  209 ttttctcg 216  Q
    | ||||||    
T  25967832 tattctcg 25967825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 55606384 - 55606600
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    |||||||| |||||||||||| ||||||||||||||||  |||||| |||| ||||||||| ||| | | |||||||| ||||||| |||||||||||      
T  55606384 aaaaatataattttcatctatatcaattgaaaaaatatttggattccatgtctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgc 55606483  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcacttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcg 216  Q
    ||||||||||| |||| || ||||||||||||||||        | | ||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  55606484 ggctgtaacggtgtttcgtcgtgatttttgttcact--------cagtgaaaaacggtaacgtccactacctatacctttttgtcg-ggcctttttctcg 55606574  T
Q  217 ataatttactgttttttaaaaccttg 242  Q
     |||   ||||||||||| |||||||    
T  55606575 gtaacggactgttttttagaaccttg 55606600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 38412007 - 38412227
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    ||||||||||||||||||||||| ||||||||| |||| | ||||   ||| ||||||||| |||| || | |||||| |||||||||||||||| ||      
T  38412007 aaaaatatgattttcatctatcttaattgaaaagatattcagatttggtgtctattgtcatgaacgacattcttttgcggccgtaatggtgtttcgtcgc 38412106  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
    ||||||||| |||||| ||  ||||||||||||||| ||| |||||||    || ||||||| || |||||||||| ||||||||||| |||||||||||    
T  38412107 ggctgtaacagcgtttcgtcttgatttttgttcactctgtgaaaacgg---taaccggtaacgtcggctacctata-ctttttgtcgccgcctttttctc 38412202  T
Q  216 gataatttactgttttttaaaacct 240  Q
    | ||||  ||  |||||||||||||    
T  38412203 ggtaatggaccattttttaaaacct 38412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 11440620 - 11440396
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    ||||||||||||||||||||||| |||||||||| |||||||| | | ||| ||||||||| || | || |||||||  |  |||| |||||||||||      
T  11440620 aaaaatatgattttcatctatcttaattgaaaaattatccggactatgtgtctattgtcatgaatgacatttttttgtggttgtaacggtgtttcatcga 11440521  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaac-ggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttct 214  Q
    |||||||| ||| ||| || || | ||||||||||| ||||||||| | | |||| || ||| |||  ||||||||||||||||| ||||||||||||||    
T  11440520 ggctgtaatggcttttcgtcgtaacttttgttcactgtgtaaaaacagtaaaaaatcgataatatcgactacctatacctttttgccgcggcctttttct 11440421  T
Q  215 cgataatttactgttttttaaaacc 239  Q
    ||||||   || |||||||||||||    
T  11440420 cgataaaagaccgttttttaaaacc 11440396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 13198221 - 13198317
Alignment:
Q  20 aatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatg 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| | |||| | |||||||| ||||||  | ||||||| ||||||| |||||    
T  13198221 aatatgattttcatgtatctcaattgaaaaaatatccggattctatgtcttttgttacaaacggcattttttttta-ccgtaatcgtgtttcgtcatg 13198317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 46308490 - 46308565
Alignment:
Q  50 aatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacg 126  Q
    ||||||| |||||||||| ||||||||| |||  ||||||||||||| |||||| |||||||||||||| |||||||    
T  46308490 aatatcccgattctatgtctattgtcatgaacaacaattttttgcagtcgtaat-gtgtttcatcatggttgtaacg 46308565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 30839653 - 30839812
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    |||||||||||||| |||| |||||||| ||||||||| | |||||||| | ||||  |||   || || |||||||| ||| |||| |  |||| || |    
T  30839653 aaaaatatgatttttatctgtctcaatt-aaaaaatattcagattctatatctattaacatggccgacatttttttgcggccataatagcatttcgtcgt 30839751  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaa 176  Q
    ||||||||||| ||||  | |||||||||||||||| | ||||||||  ||||||| ||||    
T  30839752 ggctgtaacggtgtttcatcgtgatttttgttcactctataaaaacgatgaaaaacagtaa 30839812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 19967537 - 19967310
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggca-attttttgcagccgtaatggtgtttcatca 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| | |||  ||  |||||||| |||||||  ||||||| |||    
T  19967537 aaaaatatgattttcatatatctcaattgaaaaaatatccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtca 19967438  T
Q  116 tggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttct 214  Q
    |||||||||||||||||  | | |||||||||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||| || |||||||||||    
T  19967437 tggctgtaacggcgtttcctcgagatttttgttcactctgtaaaaacggtgaaaaacggtaacttcggctacctgtacctttttgccgtggcctttttct 19967338  T
Q  215 cgataatttactgttttttaaaaccttg 242  Q
    || ||||  |||||||||||||||||||    
T  19967337 cggtaatggactgttttttaaaaccttg 19967310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 36491526 - 36491323
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||   ||||||||||||| | |||| |||| |||| ||||||||||||||      
T  36491526 aaaaatatgattttcatctatcttaattgaaaaaatatccatattctatgacaattgtcataaacgac-atttcttgcggccgcaatggtgtttcatcgc 36491428  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
     | || |||| ||||| ||||||||||||||||||| | |||||||||  ||||||| ||||||| |||||||||||||| ||||| |||  |||||| |    
T  36491427 agttgaaacgacgtttcgttgtgatttttgttcactctataaaaacggtaaaaaacgataacatcggctacctataccttattgtcacggaatttttccc 36491328  T
Q  216 gataa 220  Q
    |||||    
T  36491327 gataa 36491323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 41283515 - 41283320
Alignment:
Q  25 gattttcatctatctcaattgaa-----aaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggc 119  Q
    |||||||||||||||||||||||     |||||||| ||||| ||||| ||||||||| | || ||||||||||| ||||||| | |||||| |  |||     
T  41283515 gattttcatctatctcaattgaagaaaaaaaatatctggattttatgtctattgtcatgagcgacaattttttgcggccgtaacgatgtttcgttgtggt 41283416  T
Q  120 tgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttct 214  Q
    ||||||||| ||| |  |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| || |||||||||    
T  41283415 tgtaacggcttttcgacgtgatttttgttcactctgtaaaaacggtgaaaaacggtaacgtccgctacctatacttttttgtcacgacctttttct 41283320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 22927204 - 22927269
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  22927204 aaaaatatgattttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaacg 22927269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 16341552 - 16341621
Alignment:
Q  17 aaaaatatgattttcatctatctcaattg--aaaaaatatccggattctatgtttattgtcataaacggc 84  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  16341552 aaaaatatgtttttcatctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacggc 16341621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 39426464 - 39426614
Alignment:
Q  91 ttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctaccta 189  Q
    |||| ||||||| |||||||  ||| |||||||||||| ||| ||   ||| ||||||||||| |||||||| |  |||||| | |||||  |||||  |    
T  39426464 ttgcggccgtaacggtgttttgtcacggctgtaacggcatttcgt---gatctttgttcactttgtaaaaactgtaaaaaacagcaacattggctactaa 39426560  T
Q  190 tacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgc 243  Q
    ||||||||||| ||||||||||||||| |||   ||||||||||||||||||||    
T  39426561 tacctttttgttgcggcctttttctcggtaacagactgttttttaaaaccttgc 39426614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 13424774 - 13424834
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcat 77  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  13424774 aaaaatattattttcatttatttcaattgaaaaaatatccggattctatgtctactgtcat 13424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 39426232 - 39426288
Alignment:
Q  21 atatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcat 77  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  39426232 atatgattttcatctatcttaattgaaaaaatatttggattctatgtctattgtcat 39426288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 13424880 - 13424958
Alignment:
Q  166 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgct 244  Q
    |||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||||  ||  | |||||||||||||||    
T  13424880 aaaaacagtaacatcggctacctatacctttttttcgcggtctttttctcggtaatggaccatattttaaaaccttgct 13424958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 20141691 - 20141814
Alignment:
Q  21 atatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggct 120  Q
    |||||||||||||| |||| ||||| ||||||| | ||| ||| ||| ||||||||| |||| || ||| |||||| | || ||||||||  ||  | ||    
T  20141691 atatgattttcatccatctaaattg-aaaaataacaggaatctttgtatattgtcatgaacgacattttgttgcagacatagtggtgtttagtcgcgact 20141789  T
Q  121 gtaacggcgttttgttgtgattttt 145  Q
    ||||| | |||| ||||||||||||    
T  20141790 gtaacagtgtttcgttgtgattttt 20141814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 32617707 - 32617930
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||| || ||||  ||||||| |||||||| ||      
T  32617707 aaaaatatgattttcatctatctcaattgaaaaaatacccggattctatgtctattgtcatgaactgcatttctttgg-gccgtaacggtgtttcgtcgc 32617805  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
    |||||||||  ||||| || || ||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  32617806 ggctgtaacaacgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacgtccgctacctatacctttttgtggcggcctttttctc 32617905  T
Q  216 gataatttactgttttttaaaacct 240  Q
    | |||   || ||||||||||||||    
T  32617906 ggtaaccgaccgttttttaaaacct 32617930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 12990374 - 12990144
Alignment:
Q  12 tcatcaaaaatatgattttcatctatctcaattg-aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgttt 110  Q
    |||| |||||||||||||||||| ||||||| || ||||||||||| |||||||||| |||||||||||||| ||||||||||  || |||| ||| |||    
T  12990374 tcattaaaaatatgattttcatcgatctcaactgcaaaaaatatccagattctatgtctattgtcataaacgacaattttttgtggctgtaacggtattt 12990275  T
Q  111 catcatggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacgg-agaaaaacggtaacatccgctacctatacctttttgtcgcggcct 208  Q
    | ||   |||||||||  |||| |||||||||||||||||||   |||||||||   |||||||||||| ||| |||||||||||||||| |||| ||||    
T  12990274 cgtcgcagctgtaacgatgtttcgttgtgatttttgttcactccataaaaacggtcaaaaaacggtaacgtccactacctatacctttttatcgcagcct 12990175  T
Q  209 ttttctcgataatttactgttttttaaaacc 239  Q
    |||||||| |||   || |||||||||||||    
T  12990174 ttttctcggtaacgaaccgttttttaaaacc 12990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 9457652 - 9457554
Alignment:
Q  14 atcaaaaatatgattttcatctatctcaattgaaaaaa-tatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 111  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||| || |||| || |||||    
T  9457652 atcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttc 9457554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 9461749 - 9461651
Alignment:
Q  14 atcaaaaatatgattttcatctatctcaattgaaaaaa-tatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 111  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||| || |||| || |||||    
T  9461749 atcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttc 9461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 9457570 - 9457470
Alignment:
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
    |||||||||||||||| || |||||||||||||||| || ||   ||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||    
T  9457570 ggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactc 9457471  T
Q  216 g 216  Q
    |    
T  9457470 g 9457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 9461667 - 9461567
Alignment:
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
    |||||||||||||||| || |||||||||||||||| || ||   ||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||    
T  9461667 ggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactc 9461568  T
Q  216 g 216  Q
    |    
T  9461567 g 9461567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 14081840 - 14081977
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaa-tatccggattctatgtttatt--gtcataaacggcaattttttgcagccgtaatggtgtttcat 113  Q
    |||||| |||||||||||||||||||||||||||| | ||| |||||||||| || |  || |  ||||||| |||||||| ||||||| ||||||||||    
T  14081840 aaaaatttgattttcatctatctcaattgaaaaaaatttccagattctatgtctaatatgtaacgaacggca-ttttttgcggccgtaacggtgtttcat 14081938  T
Q  114 catggctgtaacggcgttttgttgtgatttttgttcact 152  Q
    || | ||||||| |||||| || ||||||||| ||||||    
T  14081939 cacgactgtaacagcgtttcgtcgtgatttttattcact 14081977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 34664809 - 34664745
Alignment:
Q  18 aaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacg 82  Q
    ||||||||||||||||||||||||||||||| |||||||   |||||||| ||||||||| ||||    
T  34664809 aaaatatgattttcatctatctcaattgaaacaatatccaatttctatgtctattgtcatgaacg 34664745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 24699934 - 24699975
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccgg 58  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  24699934 aaaaatataattttcatctatctcaattgaaaaaatatccgg 24699975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 35811835 - 35811729
Alignment:
Q  135 ttgtgatttttgttcacttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttta 234  Q
    |||||||||||||||||| || |||| |||||||||||||| |  || ||||||||| |||||||| | ||||  |||  |  ||||  |||||||||||    
T  35811835 ttgtgatttttgttcact-gttaaaatggagaaaaacggtatcggccactacctatatctttttgttgtggccgattttgcagtaatggactgtttttta 35811737  T
Q  235 aaaccttg 242  Q
    ||||||||    
T  35811736 aaaccttg 35811729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 25636046 - 25636241
Alignment:
Q  21 atatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggct 120  Q
    ||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||| | ||||||| | ||||||| |||||||| |   ||||    
T  25636046 atatgattttcatctatttcaattgaaaaaatacccggattatgtgtttattgtcatgaacgac-attttttacggccgtaacggtgtttcgttgcggct 25636144  T
Q  121 gtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcg 216  Q
     | | ||| ||| || |||||||||||||||| |||| |||||| ||||||| ||| ||||  ||||||||||||||||||||||||||||||||||    
T  25636145 attatggcttttggtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcatcatctacctatacctttttgtcgcggcctttttctcg 25636241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 47363841 - 47363936
Alignment:
Q  17 aaaaatatgattttcatcta-tctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 111  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||  ||||||||    
T  47363841 aaaaatatgcttttcatctaatctcaattgaaaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttc 47363936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 47363960 - 47364036
Alignment:
Q  166 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgc 243  Q
    |||||||||||| ||||||||||||| |||||||| | ||||||||||||| |||   || ||||||||||| |||||    
T  47363960 aaaaacggtaacgtccgctacctata-ctttttgtggtggcctttttctcggtaacggaccgttttttaaaatcttgc 47364036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 10493548 - 10493730
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    ||||||||||||| |||| ||||||||||||||||||| |  ||| | ||| |||||| || || ||| ||||| ||| ||| ||| |||||||  ||      
T  10493548 aaaaatatgattt-catccatctcaattgaaaaaatatacatattatgtgtctattgttatgaatggc-attttatgcggccttaacggtgttttgtcgc 10493645  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaa--acggtaacatccgctacctataccttttt 198  Q
    |||||| | | |||||||| |||||||||| |||||  ||| |||| | |||||  ||||||||||  |||| ||||||||||||    
T  10493646 ggctgttaggacgttttgtcgtgatttttggtcactccgtacaaacagtgaaaaacacggtaacataggctagctataccttttt 10493730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 35016516 - 35016753
Alignment:
Q  14 atcaaaaatatgattttcatctatctcaattg----aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtt 109  Q
    |||||||||||||||||||||||||||||| |    |||||| ||||| ||||||||| ||||||||  || |||||||||||||||| |||||||||||    
T  35016516 atcaaaaatatgattttcatctatctcaatcggaaaaaaaaaaatccgaattctatgtctattgtcaagaatggcaattttttgcagctgtaatggtgtt 35016615  T
Q  110 tcatcatggctgtaacggcgttttgttgtgatttttgttcact--------tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtc 201  Q
    || |||  ||||||| ||  |||||| |||    |||||||||        | ||||||| | ||| ||||| ||||| |||||||||||||||||||||    
T  35016616 tcgtcacagctgtaatggtattttgtcgtg----ttgttcactctataatctataaaaacagtgaagaacggcaacattcgctacctatacctttttgtc 35016711  T
Q  202 gcggcctttttctcgataatttactgttttttaaaaccttgc 243  Q
    |||||| ||||||||||||   || |||||||||||||||||    
T  35016712 gcggccattttctcgataacggacggttttttaaaaccttgc 35016753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 19263803 - 19263659
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||| | ||||||||| |||| || |||||||| ||||||| ||||||| ||  |    
T  19263803 aaaaatatgattttcatctatctcaattgaaacaatatcttgattctatatctattgtcatgaacgacagttttttgcggccgtaacggtgtttaattgt 19263704  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcac-ttgtaaaaa 160  Q
    |||| ||| | ||||| ||  |||||||||||||| |||||||||    
T  19263703 ggctataatgacgtttcgtcatgatttttgttcacattgtaaaaa 19263659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 37794789 - 37794884
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggca-attttttgcagccgtaatggtgtttc 111  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||| |||| ||  |||||||||||||||| ||||||||    
T  37794789 aaaaatatgattttcttctatctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacattttttttgcagccgtaacggtgtttc 37794884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 17989209 - 17989333
Alignment:
Q  121 gtaacggcgttttgttgtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgata 219  Q
    ||||||| |||| || ||||||||||||||||| |||||||||| ||||||||||||  | |||||||||||||||||||| | |||||||| || | ||    
T  17989209 gtaacggtgtttcgtcgtgatttttgttcacttagtaaaaacggtgaaaaacggtaatgttcgctacctatacctttttgttgtggccttttccttggta 17989308  T
Q  220 atttactgttttttaaaaccttgct 244  Q
    |   ||  |||||||||||||||||    
T  17989309 acggaccattttttaaaaccttgct 17989333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 17989125 - 17989221
Alignment:
Q  17 aaaaatatgattttcatctatctcaattg--aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 111  Q
    |||||||||||||||||| ||||||||||  |||||| |||| |||||||||| |||| |||| ||||||  |||||||| ||||||| ||||||||    
T  17989125 aaaaatatgattttcatcgatctcaattgaaaaaaaaaatccagattctatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttc 17989221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 5428669 - 5428526
Alignment:
Q  20 aatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggc 119  Q
    ||||||||||||||||||||||||||||| |||||||  ||| | ||| ||||||||| ||  |  ||||||||  | |||||| || |||| ||||       
T  5428669 aatatgattttcatctatctcaattgaaataatatccaaattttgtgtctattgtcatgaattg-tattttttgtgggcgtaatagtatttcgtcataat 5428571  T
Q  120 tgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacgg 163  Q
    |||||||| |||| || |||||||||||||||| |||||||||||    
T  5428570 tgtaacggtgtttcgtcgtgatttttgttcactctgtaaaaacgg 5428526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 20929845 - 20929783
Alignment:
Q  179 tccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaacctt 241  Q
    ||||||||||||||||||||| |||| ||||||||| | |||   ||||||||||||||||||    
T  20929845 tccgctacctatacctttttggcgcgacctttttcttggtaacggactgttttttaaaacctt 20929783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 31806161 - 31806222
Alignment:
Q  100 taatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcacttgtaaaaac 161  Q
    |||||||||||||||| ||||||||||| |||| |  ||||||||||| |  ||||||||||    
T  31806161 taatggtgtttcatcacggctgtaacggtgtttcgacgtgatttttgtccctttgtaaaaac 31806222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 8169126 - 8169312
Alignment:
Q  56 cggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcact-tg 154  Q
    |||||||||||| ||||||||| ||||||| |||||||  ||||||| |||||||| ||  |||||||||| ||||| || |||||||||||||||| ||    
T  8169126 cggattctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcggctgtaacgacgtttcgtcgtgatttttgttcactctg 8169225  T
Q  155 taaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttg 242  Q
    ||||||  | ||||||||||||| ||  ||||||||||| |||||||| | ||||||||||| |||    | ||||||||||||||||    
T  8169226 taaaaatagtgaaaaacggtaacgtcgactacctatacc-ttttgtcgtgacctttttctcggtaacgggcagttttttaaaaccttg 8169312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 32296395 - 32296249
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||| ||||||||| ||| || ||||||||  |||||||   |||||| |||     
T  32296395 aaaaatatgattttcatctatctcaattgaaaaaatattcagattttgtgtctattgtcatgaaccgc-attttttgtggccgtaacaatgtttcgtcac 32296297  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacgg 163  Q
    |||  |||||| ||||  | |||||||||||||||| |||||||||||    
T  32296296 ggcgataacggtgtttcatcgtgatttttgttcactctgtaaaaacgg 32296249  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 9177620 - 9177570
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgt 67  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9177620 aaaaatatgattttcatcaatctcaattgaaaaaatattcggattctatgt 9177570  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 10117183 - 10117121
Alignment:
Q  29 ttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttt 91  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||| || |||||    
T  10117183 ttcatctatctcaattggaaaaatatccggattctgtgtctattgtcatgaacgacatttttt 10117121  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 23490107 - 23490182
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaatttttt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||    
T  23490107 aaaaatatgattttcatctatctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcattttttt 23490182  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 23490207 - 23490286
Alignment:
Q  137 gtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
    |||||||||||||||| |||||||| || |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  23490207 gtgatttttgttcactctgtaaaaatggtgaaaaatggtaacttcggctacctatacctttttgtcgcggcctttttctc 23490286  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 10473867 - 10473968
Alignment:
Q  118 gctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacc---tttttgtcgcggcctttttc 213  Q
    ||||||| | ||||| || |||||||||||||||| ||||||||| | ||||||| ||||  || ||||||||||||   |||||||| |||||||||||    
T  10473867 gctgtaatgtcgtttcgtcgtgatttttgttcactctgtaaaaacagtgaaaaacagtaatgtcggctacctataccacctttttgtcacggcctttttc 10473966  T
Q  214 tc 215  Q
    ||    
T  10473967 tc 10473968  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 773752 - 773692
Alignment:
Q  137 gtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctataccttt 196  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||| | ||||||||||||    
T  773752 gtgatttttgttcactctgttaaaacagagaaaaacggtatcatccaccacctataccttt 773692  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 7154407 - 7154465
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtc 75  Q
    |||||||||||||||||||||||  ||| |||||| ||| ||||| | |||||||||||    
T  7154407 aaaaatatgattttcatctatcttcatttaaaaaacatcaggattatgtgtttattgtc 7154465  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 14867560 - 14867620
Alignment:
Q  182 gctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttg 242  Q
    |||||||||| |||| ||||||||||||||||||  |||   || ||||||||||||||||    
T  14867560 gctacctatatctttctgtcgcggcctttttctcagtaacggaccgttttttaaaaccttg 14867620  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 7299138 - 7298926
Alignment:
Q  18 aaaatatgattttcatc-tatctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcat 116  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| | | | || |||||| ||||||| |||||||| ||||||| ||| |||| ||      
T  7299138 aaaatatggttttcatcgtatctcaattgaaaaaatatccggattttgtctctagtgtcatgaacggca-ttttttgcggccgtaaaggtctttcgtcgc 7299040  T
Q  117 ggctgtaacggcgttttgttgtgatttttgttcac-ttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 215  Q
     ||||||||| ||||| |||||||||||||||||| ||||          |||| ||||||| || |||||| ||| |||||||||||||||||||||||    
T  7299039 agctgtaacgccgtttcgttgtgatttttgttcactttgt----------aaaagcggtaacgtcggctaccgata-ctttttgtcgcggcctttttctc 7298951  T
Q  216 gataatttactgttttttaaaacct 240  Q
    | |||   || ||||||||||||||    
T  7298950 ggtaacggaccgttttttaaaacct 7298926  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 11783545 - 11783659
Alignment:
Q  17 aaaaatatgattttcatctatctcaattg-aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatca 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||| ||| || ||||  ||||||| |||||||  ||||||| ||     
T  11783545 aaaaatatgattttcatctatctcaattgaaaaaaatatccggagtctatttctattgccatgaaaggca--tttttgcggccgtaacagtgtttcgtcg 11783642  T
Q  116 tggctgtaacggcgttt 132  Q
      |||||||||| ||||    
T  11783643 cagctgtaacggagttt 11783659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 19596577 - 19596639
Alignment:
Q  17 aaaaatatgattttcatctatctcaattgaaaaaatatccggattctatgtttattgtcataaa 80  Q
    |||||||||||||| ||| | |||||||| ||||||| |||||||||  |||||||||||||||    
T  19596577 aaaaatatgatttttatccacctcaattg-aaaaataaccggattctcagtttattgtcataaa 19596639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 50263002 - 50263069
Alignment:
Q  137 gtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgc 203  Q
    ||||||||||||||||  || ||||| ||||||||||||| ||||| | |||||||||||| ||||||    
T  50263002 gtgatttttgttcactccgttaaaacagagaaaaacggtatcatccaccacctatacctttatgtcgc 50263069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 2084 - 2165
Alignment:
Q  157 aaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaac 238  Q
    |||||||  |||||||||||| ||||||| |  || |||||||||||||||||||||||| |||   || ||||||||||||    
T  2084 aaaacggtaaaaaacggtaacgtccgctatcattaactttttgtcgcggcctttttctcggtaacagaccgttttttaaaac 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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