View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_26 (Length: 304)
Name: NF2660_low_26
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 37852411 - 37852128
Alignment:
| Q |
7 |
tccaagaatattcggttttgtatgatgtttaatatttttggatcgattagcgattttaatttaaattggtttagatttgaacactccttcttccagacaa |
106 |
Q |
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| T |
37852411 |
tccaataatattcggttctgtatgatgtttaatatttttggatcgattagcgattttaatttaaattggtttagatttgaacaccccttctttcagacaa |
37852312 |
T |
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| Q |
107 |
tccagggttcttaatgtttttgtgtttgtctctctgctaagcaagtgacacgtttttctg-taaaaaatattctttaatatttattccattggagtaaag |
205 |
Q |
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| T |
37852311 |
ttcagggttcttaatgtttttgtgtttgtctctctgctaagcaagtgacacgtttttctgcaaaaaaatattctttaatatttattccattggagtaaag |
37852212 |
T |
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| Q |
206 |
tannnnnnnaatcctatgtggcagatggcaatgtatgattcatatagtgcttttacctttattgcattagagatgctcttagtg |
289 |
Q |
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| T |
37852211 |
tatttttttaatcctatgtggcagatggcagtgtatgattcatatagtgcttttacctttattgcattagagatgctcttagtg |
37852128 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 45701009 - 45700933
Alignment:
| Q |
13 |
aatattcggttttgtatgatgtttaatatttttggatcgattagcgattttaatttaaattggtttagatttgaaca |
89 |
Q |
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|||||||| |||| ||||| ||| || |||||||||||||| || ||||| |||| || |||||||||||||||| |
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| T |
45701009 |
aatattcgatttttcatgattttttatttttttggatcgatttacggttttattttagatcggtttagatttgaaca |
45700933 |
T |
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