View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_33 (Length: 283)
Name: NF2660_low_33
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 848776 - 849030
Alignment:
| Q |
1 |
caatcagcaggagttccagaaacagagaaggaagcaatggttccatgaatgtgaacttttttggcagatataggatgaagccatgtgatgctgtgactaa |
100 |
Q |
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| T |
848776 |
caatcagcgggagttccagaaacagagaaggaagcaatggttccatgaatatgaacttgtttggcagatataggatgaagccatgtgatgctgtgactaa |
848875 |
T |
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| Q |
101 |
ctgctgatttctcactatcaggagcacatacaaagatattgaaaagattcgtattcactaatgatgataccaaacatcttaagccaggagcgtcgattcc |
200 |
Q |
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| T |
848876 |
ctgctgatttctcactatcaggagcacatacaaatatattgaaaagattcgtattcactaatgatgataccaaacctcttaagccaggagcgtcgattcc |
848975 |
T |
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| Q |
201 |
gtcgtcgtttgttattagaattcttcctctcttattattaccctcttccatcgat |
255 |
Q |
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| T |
848976 |
gtcgtcgtttgttattagaattcttcctctcttattattaccctcttccatcgat |
849030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 853086 - 853185
Alignment:
| Q |
16 |
ccagaaacagagaaggaagcaatggttccatgaatgtgaacttttttggcagatataggatgaagccatgtgatgctgtgactaactgctgatttctcac |
115 |
Q |
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| T |
853086 |
ccagaaaccgcgaaggaagcaacggttccatgaatgtcaacttgtttgacagcaactgggtgaagccatgtcatacaatggctaacggctgatttctcac |
853185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 47053720 - 47053644
Alignment:
| Q |
40 |
gttccatgaatgtgaacttttttggcagatataggatgaagccatgtgatgctgtgactaactgctgatttctcact |
116 |
Q |
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| T |
47053720 |
gttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcact |
47053644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 47063603 - 47063525
Alignment:
| Q |
38 |
tggttccatgaatgtgaacttttttggcagatataggatgaagcc-atgtgatgctgtgactaactgctgatttctcac |
115 |
Q |
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| T |
47063603 |
tggttccatcaaggtgagctttcttggcagatatagggtgaagccaatgtaataccgtgactaacatctgatttctcac |
47063525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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