View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_37 (Length: 258)
Name: NF2660_low_37
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 29829564 - 29829322
Alignment:
| Q |
8 |
catcatcaccatcaactatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29829564 |
catcatcaccatcaactatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttt |
29829465 |
T |
|
| Q |
108 |
tatacgaattgattttatctttgaacctgcatacctaacctctgcatggagccattcatcttttaaaacattcccatctttgtccagtatagatttgaga |
207 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
29829464 |
tatacgaattgatttcatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacatttccatctttgtccagtatagatttgaga |
29829365 |
T |
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| Q |
208 |
ctcttgtcatgcaattgcaaatcaaacacatgcctatgctact |
250 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
29829364 |
ctcttgtcatgcagttgcaaatcaaacacatgcctatggtact |
29829322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 29841908 - 29842140
Alignment:
| Q |
8 |
catcatcaccatcaactatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgcttt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29841908 |
catcatcaccatcaactatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgcttt |
29842007 |
T |
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| Q |
107 |
ttatacgaattgattttatctttgaacctgcatacctaacctctgcatggagccattca-tcttttaaaacattcccatctttgtccagtatagatttga |
205 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
29842008 |
ttatacgaattgatttcat------------atacctaacctctgcatggagccattcatttttttaaaacatttccatctttgtccagtatagatttga |
29842095 |
T |
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| Q |
206 |
gactcttgtcatgcaattgcaaatcaaacacatgcctatgctact |
250 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
29842096 |
gactcttgtcatgcagttgcaaatcaaacacatgcctatggtact |
29842140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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