View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_4 (Length: 750)
Name: NF2660_low_4
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 19 - 734
Target Start/End: Original strand, 54918220 - 54918944
Alignment:
| Q |
19 |
taaattcctctatgttttgtgccacctttaaattcatgcatcaaaacaaacaaatttttattcccatatcttcttcttaagccatag----------aaa |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54918220 |
taaattcctctatgttttgtgtcacctttaaattcatgcatcaaaacaaacaaatttttattcccatatcttcttcttaagccatagaaagggatagaaa |
54918319 |
T |
|
| Q |
109 |
aagtgcatattacctttttggtgagtaaaaggtagagaagagctttttgcccacacgatctgaatctactgcatcagatgataagaatgacaaaagtcca |
208 |
Q |
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| T |
54918320 |
aagtgcatattacctttttggtgagtaaaaggtagaggagagctttttgcccacacgatctgaatctactgcatcagatgataagaatgacaaaagtcca |
54918419 |
T |
|
| Q |
209 |
agtcctatccttccactcactcgaaataaaacatcagatgagtaataacaatgaaaattgttccataatatcatgaaggattaagaaaagaggtagtaga |
308 |
Q |
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| T |
54918420 |
agtcctatccttccactcactcgaaataaaacatcagatgagtaaaaacaatgaaaattgttccataatatcatgaaggattaagaaaagaggtagtaga |
54918519 |
T |
|
| Q |
309 |
gtaaaacagggatatcaaaattaaataaactaagaaaacaagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54918520 |
gtaaaacagggatatcaaaattaaataaactaagaaaacgagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatg |
54918619 |
T |
|
| Q |
409 |
aagagatcaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgagactgacagaggaagaaaaatgaaacgcgcttgaggaa |
508 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
54918620 |
aagagataaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgacattgacagaggaagaaaaatgaaacgcgcttgaggga |
54918719 |
T |
|
| Q |
509 |
tgaaacagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccatttt |
608 |
Q |
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| T |
54918720 |
tgaaacagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccatttt |
54918819 |
T |
|
| Q |
609 |
ccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgtactcattagactacttcc |
708 |
Q |
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| T |
54918820 |
ccaaggtatcatctttcaattctcattggaaatttgtactcattgaactactatcattttccaatgctaactcaataattgtactcattagactactttc |
54918919 |
T |
|
| Q |
709 |
atttttcaagggttaatcgtttcata |
734 |
Q |
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||||||||| |||||||||||||||| |
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| T |
54918920 |
atttttcaa-ggttaatcgtttcata |
54918944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 663 - 734
Target Start/End: Original strand, 54921930 - 54922001
Alignment:
| Q |
663 |
cattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgtttcata |
734 |
Q |
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|||||||||||| |||||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| ||||| |
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| T |
54921930 |
cattttccaatgctaactccataattgtagtcattagactactaccattttccaaggcttaatcgtctcata |
54922001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 54911684 - 54911635
Alignment:
| Q |
85 |
tatcttcttcttaagccatagaaaaagtgcatattacctttttggtgagt |
134 |
Q |
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||||||||||| ||||| |||||||||| ||| |||||||||||||||| |
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| T |
54911684 |
tatcttcttctaaagccctagaaaaagtatatagtacctttttggtgagt |
54911635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 692
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
| Q |
591 |
aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt |
690 |
Q |
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||||||||||| |||||||||| || | |||||||| ||| || ||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
54922126 |
aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt |
54922225 |
T |
|
| Q |
691 |
ac |
692 |
Q |
| |
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|| |
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|
| T |
54922226 |
ac |
54922227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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