View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_43 (Length: 243)
Name: NF2660_low_43
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 27983708 - 27983925
Alignment:
| Q |
11 |
catcatcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
110 |
Q |
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| T |
27983708 |
catcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
27983807 |
T |
|
| Q |
111 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
210 |
Q |
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| T |
27983808 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
27983907 |
T |
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| Q |
211 |
tttcatctggacagcagt |
228 |
Q |
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|||||||||||||||||| |
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| T |
27983908 |
tttcatctggacagcagt |
27983925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 28070238 - 28070455
Alignment:
| Q |
11 |
catcatcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28070238 |
catcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
28070337 |
T |
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| Q |
111 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
210 |
Q |
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| T |
28070338 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
28070437 |
T |
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| Q |
211 |
tttcatctggacagcagt |
228 |
Q |
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|||||||||||||||||| |
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| T |
28070438 |
tttcatctggacagcagt |
28070455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 26417256 - 26417044
Alignment:
| Q |
16 |
tcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggcaggaat |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26417256 |
tcatgtccaataagagtactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaaggcaggaat |
26417157 |
T |
|
| Q |
116 |
gattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatgtttca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||| |||||| ||||||||||||| |
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| T |
26417156 |
gattttgttccttttcgaatttgaagagaggaaacttcatggggttttttaagcgataacagatggcggcatgaacattgctcctcgtgcatatgtttca |
26417057 |
T |
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| Q |
216 |
tctggacagcagt |
228 |
Q |
| |
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|||||| |||||| |
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|
| T |
26417056 |
tctggaaagcagt |
26417044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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