View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_low_49 (Length: 218)
Name: NF2660_low_49
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 27977763 - 27977628
Alignment:
| Q |
65 |
catttgctttctgaatatatgaacacattaaacacaaatacatggattttaaagattcaagaattatagaagaaaatccaaccttgaaattagaaatacc |
164 |
Q |
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| T |
27977763 |
catttgctttctgaatatatgaacacattaaacacaaatacatggattttaaagatgcaagaattatagaagaaaatccaaccttgaaattagaaatacc |
27977664 |
T |
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| Q |
165 |
ataataacattcatgttctatatattgtcacacaat |
200 |
Q |
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| T |
27977663 |
ataataacattcatgttctatatattgtcacacaat |
27977628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 27977835 - 27977807
Alignment:
| Q |
29 |
aaaagtaagctggttattatattcatgag |
57 |
Q |
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| T |
27977835 |
aaaagtaagctggttattatattcatgag |
27977807 |
T |
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