View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2661_low_11 (Length: 229)
Name: NF2661_low_11
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2661_low_11 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32919527 - 32919755
Alignment:
| Q |
1 |
tggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagtgaagaccca |
100 |
Q |
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| T |
32919527 |
tggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagtgaagaccca |
32919626 |
T |
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| Q |
101 |
gaatgcatagtatagttggtaactttaaatggaaaggttgtagaagtgtagatccaagtgagaatagaataaagtttttgcactatgaggattgaggaag |
200 |
Q |
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| T |
32919627 |
gaatgcatagtataatcagtaactttagctggaaaggttgtagaagtgtatatccaagtgagaatagaataaagtttttgcatcatgaggattgaggaag |
32919726 |
T |
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| Q |
201 |
gatttgtaggtttattctagttatatata |
229 |
Q |
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| T |
32919727 |
aatttgtaggtttattctggctatatata |
32919755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32896095 - 32896172
Alignment:
| Q |
1 |
tggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
78 |
Q |
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| T |
32896095 |
tggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaa |
32896172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 32935765 - 32935851
Alignment:
| Q |
5 |
tttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagt |
91 |
Q |
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| T |
32935765 |
tttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaagcagtgcaatagt |
32935851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 19503608 - 19503478
Alignment:
| Q |
6 |
ttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa---------gcagtgcaatagtgaaga |
96 |
Q |
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| T |
19503608 |
ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaattgcagtgctatagtgaaga |
19503509 |
T |
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| Q |
97 |
cccagaatgcatagtatagttggtaacttta |
127 |
Q |
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| T |
19503508 |
ccaagaatgcaaaatatagtcagtaacttta |
19503478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32885379 - 32885452
Alignment:
| Q |
5 |
tttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
78 |
Q |
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| T |
32885379 |
tttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaa |
32885452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32953159 - 32953232
Alignment:
| Q |
5 |
tttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
78 |
Q |
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| T |
32953159 |
tttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaa |
32953232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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