View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2661_low_2 (Length: 581)

Name: NF2661_low_2
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2661_low_2
NF2661_low_2
[»] chr3 (9 HSPs)
chr3 (56-562)||(45650337-45650831)
chr3 (380-562)||(45643073-45643255)
chr3 (385-561)||(45886883-45887062)
chr3 (389-561)||(45703075-45703250)
chr3 (72-235)||(45643339-45643502)
chr3 (51-235)||(45702807-45702991)
chr3 (51-235)||(45886619-45886803)
chr3 (417-545)||(45634720-45634848)
chr3 (1-33)||(45650828-45650860)
[»] chr6 (1 HSPs)
chr6 (333-502)||(30054756-30054921)
[»] chr4 (1 HSPs)
chr4 (376-452)||(1192198-1192273)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 56 - 562
Target Start/End: Complemental strand, 45650831 - 45650337
Alignment:
Q  56 atctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgat 155  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650831 atctcttaagatgacattctctaatcctttgattttaggcttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgat 45650732  T
Q  156 aaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaaatattatttattctttcttt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650731 aaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaaatattatttattctttcttt 45650632  T
Q  256 gttagacacaattcaataatgggaagaaagctt---ttaatattgtaaactgaaaaatagttaattgaagttttgtcaattttagttttatattgtaaac 352  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  45650631 gttagacacaattcaataatgggaagaaagcttataataatattgtaaactgaaaaatagttaattgaagttttgtcaattttagttttat--------- 45650541  T
Q  353 acaatttccaaaactaatgtatatatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 452  Q
      |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650540 --aatttccaaaactaatg----tatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 45650447  T
Q  453 tcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctg 552  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650446 tcatgcacaactggaaattcaattagtactgacagcagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctg 45650347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 380 - 562
Target Start/End: Complemental strand, 45643255 - 45643073
Alignment:
Q  380 taactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagt 479  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45643255 taactttattatgacagtgttcaactatgtagctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagt 45643156  T
Q  480 actgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcac 562  Q
    || ||||| || |||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||    
T  45643155 acagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcac 45643073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 385 - 561
Target Start/End: Original strand, 45886883 - 45887062
Alignment:
Q  385 ttactatgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtac 481  Q
    ||||||||||||| |||||||||| |||||||   |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  45886883 ttactatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtac 45886982  T
Q  482 tgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgca 561  Q
     ||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  45886983 agacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgca 45887062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 389 - 561
Target Start/End: Original strand, 45703075 - 45703250
Alignment:
Q  389 tatgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgac 485  Q
    ||||||||| |||||||||| |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||||||| |||    
T  45703075 tatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattcaattagtacagac 45703174  T
Q  486 agcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgca 561  Q
     | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  45703175 ggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgca 45703250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 45643502 - 45643339
Alignment:
Q  72 ttctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgataaatcaggttgggcaa 171  Q
    ||||||||| ||||| ||||| | ||||||||||  |||| | || || |||| ||||| |||||   |||||  ||||| |||   | ||||||| ||     
T  45643502 ttctctaatgctttggttttatgcttctttttagctatcactatgccattgccgactctggcaacaaaccacattgttggagatggtttaggttggacag 45643403  T
Q  172 ttggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 235  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  45643402 ttggtcctgattataacacatggactagtgacaaaacctttgcagttggtgacagtctcggtaa 45643339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 45702807 - 45702991
Alignment:
Q  51 tcactatctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttg 150  Q
    |||| |||| |||| |||||||||| |||  ||||| ||||| | |||||||||| ||||| | || || |||| ||||| |||||   |||||  ||||    
T  45702807 tcacaatctattaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaaccacattgttg 45702906  T
Q  151 gtgataaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 235  Q
    | |||   | ||||||| || ||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||||||||||    
T  45702907 gagatggtttaggttggacagttgattctgattatacaacatgggctagtgacaaaacctttgtagttggtgacagtctcggtaa 45702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 45886619 - 45886803
Alignment:
Q  51 tcactatctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttg 150  Q
    |||| |||| |||| |||||||||| |||  ||||| ||||| | |||||||||| ||||| | || || |||| ||||| |||||   |||||  ||||    
T  45886619 tcacaatctattaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaaccacattgttg 45886718  T
Q  151 gtgataaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 235  Q
    | |||   | ||||||| || ||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||||||||||    
T  45886719 gagatggtttaggttggacagttgattctgattatacaacatgggctagtgacaaaacctttgtagttggtgacagtctcggtaa 45886803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 545
Target Start/End: Complemental strand, 45634848 - 45634720
Alignment:
Q  417 cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaaga 516  Q
    ||||| ||||||||||||  || ||||||||| |  || ||||| ||||||||| |||||||| | ||||  |||||||  ||||||||  | || ||||    
T  45634848 cacactgtggatgaagttgcagcaagtgactacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagctcttaaga 45634749  T
Q  517 aagcaggaacacattacttcatatgtgct 545  Q
      |||||||| ||||| ||||||| ||||    
T  45634748 ctgcaggaactcattatttcatatctgct 45634720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45650860 - 45650828
Alignment:
Q  1 agcctcattcctttagaaaaaacatagccatct 33  Q
    |||||| ||||||||||||||||||||||||||    
T  45650860 agcctccttcctttagaaaaaacatagccatct 45650828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 333 - 502
Target Start/End: Complemental strand, 30054921 - 30054756
Alignment:
Q  333 tttagttttatattgtaaacacaatttccaaaactaatgtatatatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaag 432  Q
    |||||||||  |||| || || ||||| ||||||||||||||    ||||||||||||||||| | ||||||||||||   ||||||||||||||| |||    
T  30054921 tttagttttcaattgcaaccataatttacaaaactaatgtat----gtaactttactatgacaatgttcaactatggaatcgggcacacagtggattaag 30054826  T
Q  433 ttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac 502  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||| ||||| || |||||||||||    
T  30054825 ttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac 30054756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 1192198 - 1192273
Alignment:
Q  376 tatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 452  Q
    |||||||||||||| |||  || ||||||||||||| |||||||||||||||| |||| ||| ||||||||||||||    
T  1192198 tatgtaactttactttgattgtgttcaactatggagttgggcacacagtggattaagtcaaa-aaagtgactataaa 1192273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University