View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2661_low_4 (Length: 434)

Name: NF2661_low_4
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2661_low_4
NF2661_low_4
[»] chr6 (1 HSPs)
chr6 (1-419)||(1885599-1886017)
[»] scaffold0867 (1 HSPs)
scaffold0867 (1-172)||(2112-2283)
[»] chr1 (1 HSPs)
chr1 (2-172)||(16681242-16681412)
[»] chr8 (1 HSPs)
chr8 (2-172)||(5189902-5190073)
[»] chr4 (3 HSPs)
chr4 (4-172)||(23561375-23561543)
chr4 (4-168)||(48264357-48264521)
chr4 (202-260)||(19485507-19485565)
[»] chr7 (2 HSPs)
chr7 (3-165)||(9212240-9212402)
chr7 (172-260)||(29681576-29681664)
[»] chr2 (2 HSPs)
chr2 (1-148)||(29986627-29986774)
chr2 (172-260)||(13250604-13250692)
[»] chr5 (1 HSPs)
chr5 (168-232)||(10524023-10524087)
[»] chr3 (1 HSPs)
chr3 (172-260)||(4489692-4489780)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 1885599 - 1886017
Alignment:
Q  1 cgtgaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatg 100  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||    
T  1885599 cgtgaagaaggatataagcggttattcaacgattatttttcagaagctccggtttacatggatgagtagtttcgtcgaaggtaccgaatgcataaacatg 1885698  T
Q  101 tcttctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaactggtatcacatttcccaataccattatgtcaaa 200  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1885699 tcttccttcgcatagttgaagctcttggtcaacatgatgaatattttcagctgacggttgacgcaactggtatcacatttcccaataccattatgtcaaa 1885798  T
Q  201 tttttacttggtaccgtagtactgcattgctaaggtggtttttctgttttctttgataaacttagtattagaaaaaatttcataaattttaaaatttgga 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  1885799 tttttacttggtaccgtagtactgcattgctaaggtgatttttctgttttctttgataaacttagtgttagaaaaaatttcataaattttaaaacttgga 1885898  T
Q  301 tgattatgtttcagatttaaaatgaagaggctaaaatcatgaatcaggaaaaatagagagactaaatatgtattaaatctaaagtttaataaagttcaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1885899 tgattatgtttcagatttaaaatgaagaggctaaaatcatgaatcaggaaaaatagagagactaaatatgtattaaatctaaagtttaataaagttcaat 1885998  T
Q  401 gaaaagtgttagactaagt 419  Q
    |||||||||||||||||||    
T  1885999 gaaaagtgttagactaagt 1886017  T

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Target: scaffold0867 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 2112 - 2283
Alignment:
Q  1 cgtgaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||  |||||||| || ||| ||||||| ||||||||||||||||    
T  2112 cgtgaagaaggacataagcggttattcaatgattatttttcagaaactccggttttcacagatgagcaattccgtcgaaggtaccgaatgcgtaaacatg 2211  T
Q  101 tcttctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaactggta 172  Q
    | ||| |||| ||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  2212 ttttccttcgtatagttgaagctcttagccaacatgatgaatattttcagccgaaggttgacgcaactggta 2283  T

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Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 16681412 - 16681242
Alignment:
Q  2 gtgaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatgt 101  Q
    ||||||| || |||||||| |||||| |||||||||||||||||| ||| ||||||| ||||||||||||  || |||||||||||||||||||||||||    
T  16681412 gtgaagacgggcataagcgtttattcgatgattatttttcagaagctccagtttacacggatgagcagttctgttgaaggtatcgaatgcgtaaacatgt 16681313  T
Q  102 cttctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaactggta 172  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||    
T  16681312 cttccttcacatagttgaagctcttagtcaacatgatgaatattttcagccgagggttgacgcaagtggta 16681242  T

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Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 5189902 - 5190073
Alignment:
Q  2 gtgaagaaggacataagcggttattcaatgattatttttcagaagttccggtt-tacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| |||| ||||||| |||  |||||| ||||||||||||||||    
T  5189902 gtgaagaaggacataagcggttattcaatgattatttttcataagctccgattatacacggatcagcagttccgtctaaggtaccgaatgcgtaaacatg 5190001  T
Q  101 tcttctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaactggta 172  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||    
T  5190002 tcttccttcgcataattgaagctcttagtcaacatgatgaatattttcagtcgagggttgacgcaactggta 5190073  T

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Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 23561543 - 23561375
Alignment:
Q  4 gaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatgtct 103  Q
    |||||||||||| |||| ||||||||||||||||||||||||  ||| || |||| |||||||||||| |||  |||||||||||||| |||||||||||    
T  23561543 gaagaaggacatgagcgattattcaatgattatttttcagaaactccagtgtacacggatgagcagttccgtctaaggtatcgaatgcataaacatgtct 23561444  T
Q  104 tctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaactggta 172  Q
    |  ||||| |||||||||||||||| ||| ||||||| |||||||||||||  ||||| ||||||||||    
T  23561443 ttcttcgcttagttgaagctcttagccaatatgatgagtattttcagctgagggttgatgcaactggta 23561375  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 48264521 - 48264357
Alignment:
Q  4 gaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatgtct 103  Q
    ||||||||||| ||||| ||||||||||||||||||||||||  ||  || |||| ||||||||||||  ||  |||||| ||||||| |||||||||||    
T  48264521 gaagaaggacacaagcgattattcaatgattatttttcagaaactctagtgtacacggatgagcagttctgtctaaggtaccgaatgcataaacatgtct 48264422  T
Q  104 tctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgcaact 168  Q
    |  |||||||||||||||||||| | ||| ||||||  |||||||||||||  ||||| ||||||    
T  48264421 ttcttcgcatagttgaagctcttggccaatatgatgggtattttcagctgagggttgatgcaact 48264357  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 19485507 - 19485565
Alignment:
Q  202 ttttacttggtaccgtagtactgcattgctaaggtggtttttctgttttctttgataaa 260  Q
    |||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||||    
T  19485507 tttttcttggcaccgtagtagtgcattgctacggtagttttcctgttttctttgataaa 19485565  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 9212402 - 9212240
Alignment:
Q  3 tgaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatgtc 102  Q
    ||||||||||||| | | |||||||||||||||||||| ||||| ||  ||||||| ||||||||| |||||| ||||||| |||||||||||||||||     
T  9212402 tgaagaaggacatgaacagttattcaatgattattttttagaagctctagtttacacggatgagcaatttcgtcgaaggtaccgaatgcgtaaacatgtt 9212303  T
Q  103 ttctttcgcatagttgaagctcttagtcaacatgatgaatattttcagctgactgttgacgca 165  Q
    ||| ||| |||||||||| |||||  |||||||||||| |||||||||||||  |||||||||    
T  9212302 ttccttcacatagttgaaactcttgatcaacatgatgagtattttcagctgagggttgacgca 9212240  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 29681664 - 29681576
Alignment:
Q  172 atcacatttcccaataccattatgtcaaatttttacttggtaccgtagtactgcattgctaaggtggtttttctgttttctttgataaa 260  Q
    ||||||||| |||||| ||| || |||  |||| |||||| | ||||| |||||||||| |  ||||||| |||| |||||||||||||    
T  29681664 atcacattttccaataacataatttcagcttttcacttggcaacgtagcactgcattgcaactgtggtttatctgatttctttgataaa 29681576  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 29986774 - 29986627
Alignment:
Q  1 cgtgaagaaggacataagcggttattcaatgattatttttcagaagttccggtttacatggatgagcagtttcgtagaaggtatcgaatgcgtaaacatg 100  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||  ||  |  ||||||||| |||||||| || ||||||||||||||| ||||||||    
T  29986774 cgtgaagaaggacataagcggttgttcaataattacttttcagaaactctagggtacatggattagcagttttgtcgaaggtatcgaatgcataaacatg 29986675  T
Q  101 tcttctttcgcatagttgaagctcttagtcaacatgatgaatattttc 148  Q
     |||| || | || || ||||||||| || |||||||||| |||||||    
T  29986674 ccttcctttgtatcgtcgaagctcttggtaaacatgatgattattttc 29986627  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 13250692 - 13250604
Alignment:
Q  172 atcacatttcccaataccattatgtcaaatttttacttggtaccgtagtactgcattgctaaggtggtttttctgttttctttgataaa 260  Q
    |||||||||||||||| ||| ||||||  |||| |||||| ||| ||| |||||||||| | |||||||| |||| |||||||||||||    
T  13250692 atcacatttcccaatagcataatgtcagcttttcacttggcaccatagcactgcattgcaacggtggtttatctgatttctttgataaa 13250604  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 10524087 - 10524023
Alignment:
Q  168 tggtatcacatttcccaataccattatgtcaaatttttacttggtaccgtagtactgcattgcta 232  Q
    |||||||||||||||| ||| || |||||||   |||| ||||| ||||||||| ||||||||||    
T  10524087 tggtatcacatttccccatagcaatatgtcaggctttttcttggcaccgtagtattgcattgcta 10524023  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 4489692 - 4489780
Alignment:
Q  172 atcacatttcccaataccattatgtcaaatttttacttggtaccgtagtactgcattgctaaggtggtttttctgttttctttgataaa 260  Q
    |||||||||||||||  ||| |||| |  |||| | |||| ||| ||| |||||||||| | |||||||| |||| |||||||||||||    
T  4489692 atcacatttcccaatggcataatgtgagcttttcatttggcaccatagcactgcattgcaacggtggtttatctgatttctttgataaa 4489780  T

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