View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2661_low_5 (Length: 373)
Name: NF2661_low_5
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2661_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 4234347 - 4234556
Alignment:
| Q |
19 |
aatcatttgatattttattgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcccacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4234347 |
aatcatttgatattttattgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcccacaag |
4234446 |
T |
|
| Q |
119 |
caagactttgggaaaaaggcctaatgagagtggtgactatgcctgataaggggtgctttgtctgcaacaaataaaattcagaagcttgcccgtatggaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4234447 |
caagactttgggaaaaaggcctaatgagagtggtgactatgcctgat-gggggtgctttgtctgcaacaaataaaattcagaagcttgcccgtatggaaa |
4234545 |
T |
|
| Q |
219 |
aattggattaa |
229 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4234546 |
aattgtattaa |
4234556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 4234624 - 4234693
Alignment:
| Q |
295 |
tgtcgtattgaactcagttttactatgctttattgcaatgtgaaacattattttttgtggccatattctt |
364 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
4234624 |
tgtcgtattgaactgagttttactatgctttattgcgatgtgaaacattattttttgtgaccattttctt |
4234693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 36513496 - 36513282
Alignment:
| Q |
19 |
aatcatttgatattttattgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggat------actcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36513496 |
aatcatttgatattttattgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcatactcc |
36513397 |
T |
|
| Q |
113 |
cacaagcaagactttgggaaaaaggcctaatgagagtggtgactatgcctgataaggggtgctttgtctgcaacaaataaaattcagaagcttgcccgta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36513396 |
cacaagcaagactttgggaaaaaggcctaatgagagtggtgactatg-ctgat-gggggtggtttgtctgcaacaaataaaattcagaagcttgccagta |
36513299 |
T |
|
| Q |
213 |
tggaataattggattaa |
229 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
36513298 |
tggaaaaattggattaa |
36513282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 36513163 - 36513123
Alignment:
| Q |
308 |
tcagttttactatgctttattgcaatgtgaaacattatttt |
348 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36513163 |
tcagttttactatgctttattgcgatgtgaaacattatttt |
36513123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University