View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2661_low_6 (Length: 326)
Name: NF2661_low_6
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2661_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 42729928 - 42730182
Alignment:
| Q |
54 |
tattataataaaatagctggaatttaagagagaaaatttgacaccacaaataatgtggagatttgagtgttacaaacttataattgtttagtgttcttct |
153 |
Q |
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| T |
42729928 |
tattataataaaatagctggaatttaagagagaaaatttgacaccacaaataatgtggagatttgagtgttacaaacttataattgtctagtgttcttct |
42730027 |
T |
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| Q |
154 |
tcctaaatagaaatggtattgacttagggggaaaatattgtttggtgtaaaattttggtttaattacgattatggttcataaattaataaacgtaataat |
253 |
Q |
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| T |
42730028 |
tcctaaatagaaatggtcttg-cttagggggaatatattgtttggtgtaaaattttggcttaattacgattatggttcataaattaataaacgtaataat |
42730126 |
T |
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| Q |
254 |
tttttcttgtctaatgtgggtggttccttagggctcctcttctgacttaacaatct |
309 |
Q |
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| T |
42730127 |
tttttcttgtcttatgtgggtggttccttagggctcctcttctgacttaacaatct |
42730182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42728926 - 42728975
Alignment:
| Q |
1 |
cttcttaatgtagtatattcagtgttattttatttcgaacagtttcaact |
50 |
Q |
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| T |
42728926 |
cttcttagtgtagtatattcagtgttattttatttcgaacagtttcaact |
42728975 |
T |
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