View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2661_low_9 (Length: 250)
Name: NF2661_low_9
Description: NF2661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2661_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 36512693 - 36512855
Alignment:
| Q |
23 |
tgtgttaaaagagtgttagaaggtgtgtccctagccttactctattgagatttatggtggaccatatgcaattttgattcacttaatatatttggtgtta |
122 |
Q |
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| T |
36512693 |
tgtgttaaaagagtgctagaagatgtgtccctagccctactctattgagatttatgatggactatatgcaattttgattcacctaatacatttggtgtta |
36512792 |
T |
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| Q |
123 |
aaaactaacggagaagactatattgtgactaacggtcgtatagttaaaaagaccaaaacataac |
186 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |||| || ||| |||||||||||||| |
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| T |
36512793 |
aaaattaaaggagaagactatattgtgactaacggtcatata-tttaaaggaccaaaacataac |
36512855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 36512929 - 36512972
Alignment:
| Q |
203 |
aatgtatttcaaatggctggaaacttttgtttttcttaagaatc |
246 |
Q |
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| T |
36512929 |
aatgtatttcgaatggctggaaactttcgtttttcttaagaatc |
36512972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 4235066 - 4234962
Alignment:
| Q |
23 |
tgtgttaaaagagtgttagaaggtgtgtccctagccttactctattgagatttatggtggaccatatgcaattttgattcacttaatatatttggtgtta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
4235066 |
tgtgttaaaagagtgttagaaggtgtgtccctagccctactctattgagatttatggtggaccatatgcaattttgattcacctaatacatttggtgtta |
4234967 |
T |
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| Q |
123 |
aaaac |
127 |
Q |
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||||| |
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| T |
4234966 |
aaaac |
4234962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 4234846 - 4234803
Alignment:
| Q |
203 |
aatgtatttcaaatggctggaaacttttgtttttcttaagaatc |
246 |
Q |
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|||||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
4234846 |
aatgtatttcgaatcgctggaaatttttgtttttcttaagaatc |
4234803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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