View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_high_14 (Length: 548)

Name: NF2662_high_14
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_high_14
NF2662_high_14
[»] chr8 (1 HSPs)
chr8 (1-539)||(28431346-28431883)
[»] chr5 (12 HSPs)
chr5 (159-341)||(13372514-13372696)
chr5 (154-354)||(13378239-13378439)
chr5 (154-348)||(13425591-13425785)
chr5 (154-341)||(13446304-13446491)
chr5 (157-350)||(13453112-13453305)
chr5 (196-329)||(13386091-13386224)
chr5 (154-347)||(13418718-13418911)
chr5 (190-329)||(13389873-13390012)
chr5 (202-329)||(13394345-13394472)
chr5 (190-335)||(13411596-13411741)
chr5 (32-83)||(15580379-15580430)
chr5 (52-85)||(40516775-40516808)
[»] chr4 (3 HSPs)
chr4 (190-341)||(47600483-47600634)
chr4 (31-85)||(32028214-32028268)
chr4 (57-85)||(36114915-36114943)
[»] chr6 (2 HSPs)
chr6 (31-80)||(32906737-32906786)
chr6 (31-83)||(32695432-32695484)
[»] scaffold0020 (1 HSPs)
scaffold0020 (37-85)||(172514-172562)


Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 28431346 - 28431883
Alignment:
Q  1 acacttgtcattgagcctatgtttggtgtcatatgtcagaataacaacgatccaccatgatttttcaaaagctacactttatagcattcggtcgttgcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28431346 acacttgtcattgagcctatgtttggtgtcatatgtcagaataacaacgatccaccatgatttttcaaaagctacactttatagcattcggtcgttgcga 28431445  T
Q  101 ttttgacataccagtgtgagattgacagtatgaatcacaaatataatgttatgtttgtagggagaaagataataggagggagtctgatcggaggaattaa 200  Q
    || |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28431446 ttctgacataccagtgcaagattgacagtatgaatcacaaatataatgttatgtttgtagggagaaagataataggagggagcctgatcggaggaattaa 28431545  T
Q  201 ggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcattggagcgtctg 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28431546 ggagacacaagaaatgatagattttgctgctaaacatgacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcattggagcgtctg 28431645  T
Q  301 cttaaagcagatgttaaatatcgatttgttattgatattgggaatacattgaagagctcttaatttttaattttgcttggtccatcttttgagaggaatt 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28431646 cttaaagcagatgtcaaatatcgatttgttattgatattgggaatacattgaagagctcttaatttttaattttgcttggtccatcttttgagaggaatt 28431745  T
Q  401 ttgcatggttcannnnnnnncacaaataaatgtagttgcttattggctttgagtttgctcattgtagtctcatattatgagaaatttcagcaaagtatgt 500  Q
    ||||||||||||        |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28431746 ttgcatggttca-tttttttcacaaataaatgtagttgcttattggctttgagtttgctcatggtagtctcatattatgagaaatttcagcaaagtatgt 28431844  T
Q  501 tcccattttatgtcatttagcatatcaataaagtattat 539  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28431845 tcccattttatgtcatttagcatatcaataaagtattat 28431883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 159 - 341
Target Start/End: Complemental strand, 13372696 - 13372514
Alignment:
Q  159 agggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaa 258  Q
    ||||||||||||||| || |||||| |||| ||||| || |||||||||||||||||||| |||||||| || |||||| | ||||||||||| |||||     
T  13372696 agggagaaagataattggtgggagtatgattggagggataaaggagacacaagaaatgattgattttgcagccaaacatgatgtgaaacctgatattgag 13372597  T
Q  259 gttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgg 341  Q
    ||| || ||   ||||||||||| | |||| |||| ||||| || ||||| ||||| |||||||| ||||||||||| |||||    
T  13372596 gttattccaatagattatgtgaatagtgcaatggatcgtctactcaaagctgatgtgaaatatcgctttgttattgacattgg 13372514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 154 - 354
Target Start/End: Complemental strand, 13378439 - 13378239
Alignment:
Q  154 tttgtagggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaa 253  Q
    |||||||||||||||| ||| || |||||| |||| ||||| || ||||| |||||||||||||| |||||||| || ||||||  ||| |||||||| |    
T  13378439 tttgtagggagaaagacaattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata 13378340  T
Q  254 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgggaatacattgaa 353  Q
    |||| |||||| |||  |||||||| || |||||| |||| ||  |  | ||||| ||||| |||||||||||||||||||| ||||| || ||| ||||    
T  13378339 ttgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaacacaatgaa 13378240  T
Q  354 g 354  Q
    |    
T  13378239 g 13378239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 348
Target Start/End: Complemental strand, 13425785 - 13425591
Alignment:
Q  154 tttgtagggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaa 253  Q
    ||||||||||||||| || |||  || ||| |||| ||||| || |||||||| ||||||||||| |||||||| ||  |||| || || | |||||| |    
T  13425785 tttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggccgaacacaatgtaacacctgata 13425686  T
Q  254 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgggaataca 348  Q
    |||| |||||| |   ||||||||| ||||| ||| ||||||||||    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  13425685 ttgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagatgtgaaatatcgattcgttattgatattggaaataca 13425591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 13446491 - 13446304
Alignment:
Q  154 tttgtagggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaa 253  Q
    |||||||||||||||  |||||  || ||| | || ||||| || || ||||| ||||||||||| ||||||||||||||||| || || |  ||||| |    
T  13446491 tttgtagggagaaagtcaatagctggaagtttaattggagggataaaagagactcaagaaatgattgattttgctgctaaacacaatgtaacgcctgaga 13446392  T
Q  254 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgg 341  Q
    |||| |||||| |   ||||||||| ||||| ||| ||||||||||  |||||| |||||| ||||||||||| || |||||||||||    
T  13446391 ttgaggttgttcctattgattatgtcaacaccgcaatggagcgtcttgttaaaggagatgtcaaatatcgattcgtgattgatattgg 13446304  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 350
Target Start/End: Complemental strand, 13453305 - 13453112
Alignment:
Q  157 gtagggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattg 256  Q
    ||||||||||||||| ||| ||| ||| |||| ||||| || |||||||| ||||||||||| |||||||| ||  |||| || || || ||||| ||||    
T  13453305 gtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgatattg 13453206  T
Q  257 aagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgggaatacatt 350  Q
    |  |  || |   ||||||||| ||||| ||  ||||||| || |||||||||||||| |||||||||||||| ||||||||||| || |||||    
T  13453205 agatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagcagatgtgaaatatcgatttgtgattgatattggaaacacatt 13453112  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 329
Target Start/End: Original strand, 13386091 - 13386224
Alignment:
Q  196 attaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcattggagc 295  Q
    ||||||||||| ||||| ||| | || |||||||||||||| || || |||||||| |||||||||||| | |  |||||||| ||||| ||| | ||||    
T  13386091 attaaggagactcaagagatgcttgaatttgctgctaaacacaatgtaaaacctgacattgaagttgttcctgtggattatgttaacacagcaattgagc 13386190  T
Q  296 gtctgcttaaagcagatgttaaatatcgatttgt 329  Q
    | || || ||||||||||| ||||||||||||||    
T  13386191 gactcctcaaagcagatgtcaaatatcgatttgt 13386224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 347
Target Start/End: Complemental strand, 13418911 - 13418718
Alignment:
Q  154 tttgtagggagaaagataataggagggagtctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaa 253  Q
    ||||||||||||||| || |||  || ||| |||| ||||| || |||||||  ||||||||| | |||||||| ||  |||| || || |  ||||| |    
T  13418911 tttgtagggagaaagttagtagctggaagtttgattggagggataaaggagagtcaagaaatggttgattttgcagcagaacacaatgtaacgcctgata 13418812  T
Q  254 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgggaatac 347  Q
    |||| |||||| |   ||||||||| ||||| ||| ||||||||||   |||||||||||||||||||||||| || ||||||||||| |||||    
T  13418811 ttgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgataaagcagatgttaaatatcgattcgtgattgatattggaaatac 13418718  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 190 - 329
Target Start/End: Original strand, 13389873 - 13390012
Alignment:
Q  190 ggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcat 289  Q
    ||||| || |||||||| ||||| ||| | || |||||||||||||| | ||| |||||||| |||||||| ||| | |  |||||||| ||||| |||     
T  13389873 ggaggcatcaaggagactcaagagatgcttgactttgctgctaaacacagcgtaaaacctgacattgaagtcgttcctgtggattatgttaacacagcaa 13389972  T
Q  290 tggagcgtctgcttaaagcagatgttaaatatcgatttgt 329  Q
    | ||||| || || ||||||||||| ||||||||||||||    
T  13389973 ttgagcgactcctcaaagcagatgtcaaatatcgatttgt 13390012  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 13394345 - 13394472
Alignment:
Q  202 gagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcattggagcgtctgc 301  Q
    ||||||||||||||||| ||||||||||||||||| ||  | ||||| || || |||||  |  |||  |||||||| ||||| ||| || |||| || |    
T  13394345 gagacacaagaaatgattgattttgctgctaaacacaatataaaaccagacatcgaagtcataccagtggattatgttaacacagcaatgaagcgactcc 13394444  T
Q  302 ttaaagcagatgttaaatatcgatttgt 329  Q
    | ||||||||||| ||||||||||||||    
T  13394445 tcaaagcagatgtcaaatatcgatttgt 13394472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 13411596 - 13411741
Alignment:
Q  190 ggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcat 289  Q
    |||||||| ||||| || ||||| ||||| ||||||||||||||||| || ||  ||||||| ||||||||  |  |    |||||||| ||||| |||     
T  13411596 ggaggaatgaaggaaactcaagagatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaa 13411695  T
Q  290 tggagcgtctgcttaaagcagatgttaaatatcgatttgttattga 335  Q
    |||||||| | |  ||| |||||||||||||||||||||| |||||    
T  13411696 tggagcgtgtccacaaatcagatgttaaatatcgatttgtgattga 13411741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 15580379 - 15580430
Alignment:
Q  32 tatgtcagaataacaacgatccaccatgatttttcaaaagctacactttata 83  Q
    |||| |||||| |||| |||||||| | ||||||||||||||||||||||||    
T  15580379 tatgacagaatcacaatgatccaccgtaatttttcaaaagctacactttata 15580430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 40516775 - 40516808
Alignment:
Q  52 ccaccatgatttttcaaaagctacactttatagc 85  Q
    ||||||||||||||||||||||||||||| ||||    
T  40516775 ccaccatgatttttcaaaagctacactttgtagc 40516808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 341
Target Start/End: Complemental strand, 47600634 - 47600483
Alignment:
Q  190 ggaggaattaaggagacacaagaaatgatagattttgctgctaaacataacgtgaaacctgaaattgaagttgtttcagctgattatgtgaacactgcat 289  Q
    ||||| || |||||||| ||||| ||| | ||||||||||||||||| || || ||||||   ||||||||  |  |    |||||||| |||||||||     
T  47600634 ggagggatgaaggagactcaagatatgcttgattttgctgctaaacacaatgtaaaacctaccattgaagtcatccctatggattatgttaacactgcaa 47600535  T
Q  290 tggagcgtctgcttaaagcagatgttaaatatcgatttgttattgatattgg 341  Q
    ||||||| || || ||||||||||| |||||||||||||| ||||| |||||    
T  47600534 tggagcgactcctcaaagcagatgtcaaatatcgatttgtgattgacattgg 47600483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 32028214 - 32028268
Alignment:
Q  31 atatgtcagaataacaacgatccaccatgatttttcaaaagctacactttatagc 85  Q
    |||||||||||| || | ||||||| |||||||||||||||||||||||||||||    
T  32028214 atatgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagc 32028268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 36114915 - 36114943
Alignment:
Q  57 atgatttttcaaaagctacactttatagc 85  Q
    |||||||||||||||||||||||||||||    
T  36114915 atgatttttcaaaagctacactttatagc 36114943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 32906786 - 32906737
Alignment:
Q  31 atatgtcagaataacaacgatccaccatgatttttcaaaagctacacttt 80  Q
    |||||||||||| ||||||||||| | |||||||||||||||||| ||||    
T  32906786 atatgtcagaatcacaacgatccatcgtgatttttcaaaagctacgcttt 32906737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 32695432 - 32695484
Alignment:
Q  31 atatgtcagaataacaacgatccaccatgatttttcaaaagctacactttata 83  Q
    |||||||||||| ||||  ||||| | |||||||| |||||||||||||||||    
T  32695432 atatgtcagaatcacaataatccatcgtgattttttaaaagctacactttata 32695484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 172514 - 172562
Alignment:
Q  37 cagaataacaacgatccaccatgatttttcaaaagctacactttatagc 85  Q
    |||||| || || ||||||||||||||||||||||||||||||| ||||    
T  172514 cagaatcacgacaatccaccatgatttttcaaaagctacactttgtagc 172562  T

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