View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_15 (Length: 527)
Name: NF2662_high_15
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 44028745 - 44028239
Alignment:
| Q |
1 |
attaattaaaactattagtattagatagttaacttaaagggacaccagacattattcttaatttattggtgatgcaatacccttcccaaacaaaatacta |
100 |
Q |
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| T |
44028745 |
attaattaaaactattagtattagatagttaacttaaagggacaccagacattattcttaatttattggtgatgcaatacccttcccaaa----atagta |
44028650 |
T |
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| Q |
101 |
tattatgcatgcattgatgattggccagtggaagnnnnnnnncacaaaaccataaaagtttaatttataggccgtacagtatagtataacatcatataac |
200 |
Q |
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| T |
44028649 |
tattatgcatgcattgatgattggccagtggaagaaaagaaacacaaaaccataaaagtttaatttataggccgtatagtatagtataacatcatataac |
44028550 |
T |
|
| Q |
201 |
taagctaaacatgacgactacaaaattatgtcaattaactaacagagcaatgactatatatgaagtcatcttattcatgatctctgaaatattaatgtaa |
300 |
Q |
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| T |
44028549 |
taagctaaacatgacgactacaaaattatgtcaattaactaacagagcaatgactatatatgaagtcatcttattcatgatctctgaaatattaatgtaa |
44028450 |
T |
|
| Q |
301 |
ctatataatatatattagttcatggctctgtctcaaatccatatagcaccagcatccttcaacataggaactaattgattcctcacatgaaggctcatga |
400 |
Q |
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| T |
44028449 |
ctatataatatatattagttcatggctctgtctcaaatccatatagcaccagcatccttcaacataggaactaattgattcctcacatgaaggctcatga |
44028350 |
T |
|
| Q |
401 |
nnnnnnnggaaccacctctgaattgttgtcctatgaaaacagcaggtacacttggtttgcaccccatttgaagcaactcactctcaatctgtgacccatt |
500 |
Q |
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| T |
44028349 |
tttttttggaaccacctctgaattgttgtcctatgaaaacagcaggtacacttggtttgcaccccatttgaagcaactcactctcaatctgtgacccatt |
44028250 |
T |
|
| Q |
501 |
tgtgattttat |
511 |
Q |
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||||||||||| |
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| T |
44028249 |
tgtgattttat |
44028239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 44034788 - 44034743
Alignment:
| Q |
411 |
accacctctgaattgttgtcctatgaaaacagcaggtacacttggt |
456 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
44034788 |
accacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
44034743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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