View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2662_high_16 (Length: 523)
Name: NF2662_high_16
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Original strand, 6410125 - 6410621
Alignment:
| Q |
17 |
cactgacgagttacataaacatgcagatatacacatttaacccatgagcaataaatacatgcttgaacaacgacagacctataagaccatttcatatact |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410125 |
cactgacaagttacataaacatgcagatatacacatttaacccatgagcaataaatacatgcttgaacaacgacagacctataagaccatttcatatact |
6410224 |
T |
|
| Q |
117 |
ctataaatgtgttcaacgnnnnnnnggaggaagagaaaacaatagagtgaaagcatacatagacactactgctactgagcgtcgtatactgggtgaagtc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6410225 |
ctataaatgtgttcaacgaaaaaaaggaggaagagaaaacaatagagtgaaaacatacatagacactactgctaatgagcgtcgtatactgggtgaagtc |
6410324 |
T |
|
| Q |
217 |
atacatgggagaaaggata--aatataca--aaagtatcaataatttttaaaatgtatgtaacaccttttaagatgaatctttctaagaaccggtttaaa |
312 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410325 |
atacatgggagaaaggatataaatatacataaaagtatcaatagtttttaaaacgtatgtaacaccttttaagatgaatctttctaagaaccggtttaaa |
6410424 |
T |
|
| Q |
313 |
atgtatttttaagttggttattaaaatagcctacctaaagtgtatgtttgaaatcagttttatatccgatcaacttaaaatgctgagtgc-ttcaacctt |
411 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6410425 |
atatatttttaagttggttattaaaaaagcccacctaaagtgtatgtttgaaatcagttttatatccgatcaacttaaaatgctgagtgctttcaacctt |
6410524 |
T |
|
| Q |
412 |
attgcaagaatgttaccgcgtgctttacaagaatgagttccattcggttcataattcaattggtattagtctatctatctgtcagattgtatataat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6410525 |
attgcaagaatgttaccgcgtgctttacaagaatgagttccgttcggttcataattcaattggtattagtctatctatctgtccgattgtgtataat |
6410621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University