View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_high_17 (Length: 501)

Name: NF2662_high_17
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_high_17
NF2662_high_17
[»] chr7 (2 HSPs)
chr7 (261-486)||(18940086-18940311)
chr7 (7-195)||(18940377-18940565)
[»] chr2 (2 HSPs)
chr2 (274-471)||(7828482-7828679)
chr2 (43-145)||(19897651-19897753)
[»] chr3 (6 HSPs)
chr3 (308-486)||(53689708-53689890)
chr3 (308-486)||(52311008-52311190)
chr3 (320-466)||(31688537-31688685)
chr3 (320-466)||(31911891-31912039)
chr3 (320-466)||(31945539-31945687)
chr3 (377-453)||(12537670-12537746)
[»] scaffold0003 (2 HSPs)
scaffold0003 (304-466)||(35740-35904)
scaffold0003 (320-466)||(42411-42559)
[»] chr1 (1 HSPs)
chr1 (307-464)||(41326935-41327100)
[»] chr6 (4 HSPs)
chr6 (307-475)||(20910032-20910208)
chr6 (307-475)||(20924480-20924656)
chr6 (320-466)||(27444802-27444947)
chr6 (288-326)||(11382861-11382899)
[»] chr8 (1 HSPs)
chr8 (307-465)||(42313158-42313324)
[»] scaffold0096 (1 HSPs)
scaffold0096 (377-453)||(28836-28912)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 261 - 486
Target Start/End: Complemental strand, 18940311 - 18940086
Alignment:
Q  261 ccctctgaattacatgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaattt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18940311 ccctctgaattacatgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaattt 18940212  T
Q  361 gctcgattggtcgttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18940211 gctcgattggtcgttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaattaaacagggttgtgagtttctgttttatataa 18940112  T
Q  461 tttctagcatgagattatatattttt 486  Q
    ||||||||||||||||||||||||||    
T  18940111 tttctagcatgagattatatattttt 18940086  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 18940565 - 18940377
Alignment:
Q  7 tccaagaatatagttttaatctcatgannnnnnnctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagtt 106  Q
    ||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18940565 tccaataatatagttttaatctcatgatttttttctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagtt 18940466  T
Q  107 ctttcgccgagattcgtgccgaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttgattcttc 195  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18940465 ctttcgccgagattcgtgctaaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttgattcttc 18940377  T

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Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 274 - 471
Target Start/End: Complemental strand, 7828679 - 7828482
Alignment:
Q  274 atgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaatttgctcgattggtcg 373  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |     
T  7828679 atgagctttaatttggcaactatttggtgtagaatcaaaatagagcaattgggttttcaagtactgcagttttgaaccaatcaatttgctcgattgggca 7828580  T
Q  374 ttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatg 471  Q
    |||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7828579 ttgttaatttttgttttgaaaagtctttagctttggttaaaaatagttgaagaactaaacggggctgtgagtttctgttttatataatttctagcatg 7828482  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 19897651 - 19897753
Alignment:
Q  43 caagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggtt 142  Q
    |||||||||||| ||||| |||||||| || ||| || ||||||||||| | |||||| ||||| |  |||||| ||| |||| ||||||||| ||||||    
T  19897651 caagaatgtaatgtaagttatgaagctcgagaacccaattgaaaaagaatcaaaggataaagttttaccgccgaaatttgtgctgaaagtctcaaaggtt 19897750  T
Q  143 ctt 145  Q
    |||    
T  19897751 ctt 19897753  T

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Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 308 - 486
Target Start/End: Original strand, 53689708 - 53689890
Alignment:
Q  308 tcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaatttttgttttgaaaagatttaag 403  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||     |||||||| ||||||| |||||||||| || ||| |||||| ||| ||    
T  53689708 tcaaaatagagcaattgggttttcaagttctacagttttgaaccaattggtaaatttgctagattggtggttgttaattcttttttggaaaagtttttag 53689807  T
Q  404 ctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatattttt 486  Q
    ||||| |||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||  |||||||| || |||||||    
T  53689808 ctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctgacatgagatgatgtattttt 53689890  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 308 - 486
Target Start/End: Complemental strand, 52311190 - 52311008
Alignment:
Q  308 tcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaatttttgttttgaaaagatttaag 403  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||     |||||||| ||||||| |||||||||| || ||| |||    ||| ||    
T  52311190 tcaaaatagagcaattgggttttcaagttctgcagttttgaaccaattggtaaatttgctagattggtggttgttaattcttttttagaattttttttag 52311091  T
Q  404 ctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatattttt 486  Q
    ||||| |||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||| || |||||||    
T  52311090 ctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctaacatgagatgatgtattttt 52311008  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 320 - 466
Target Start/End: Original strand, 31688537 - 31688685
Alignment:
Q  320 aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat 417  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||  || || ||||||||||||||| ||    ||| ||||||  || |||||    
T  31688537 aattgggttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31688636  T
Q  418 agttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    |||||||||||| ||  ||||||||||||| | ||||||||||||||||    
T  31688637 agttgaagaacttaatggggttgtgagtttttattttatataatttcta 31688685  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 466
Target Start/End: Complemental strand, 31912039 - 31911891
Alignment:
Q  320 aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat 417  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||||  || || ||||||||||||||| ||    ||| ||||||  || |||||    
T  31912039 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31911940  T
Q  418 agttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    |||||||||||| ||  ||||||||||||| | ||||||||||||||||    
T  31911939 agttgaagaacttaatggggttgtgagtttttattttatataatttcta 31911891  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 466
Target Start/End: Complemental strand, 31945687 - 31945539
Alignment:
Q  320 aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat 417  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||||  || || ||||||||||||||| ||    ||| ||||||  || |||||    
T  31945687 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31945588  T
Q  418 agttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    |||||||||||| ||  ||||||||||||| | ||||||||||||||||    
T  31945587 agttgaagaacttaatggggttgtgagtttttattttatataatttcta 31945539  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 12537746 - 12537670
Alignment:
Q  377 ttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttt 453  Q
    |||||||||||||||||||| ||  | ||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  12537746 ttaatttttgttttgaaaagtttctacctttagttaaaaatagttgaagaactaaatggggttgtgagtttctgttt 12537670  T

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Target: scaffold0003 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 304 - 466
Target Start/End: Complemental strand, 35904 - 35740
Alignment:
Q  304 agaatcaaaatagagcaattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagattta 401  Q
    |||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||  || || ||||||||||||||| ||    |||     
T  35904 agaatcaaaatatagcaattgggttttcaaggtactatagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaatttttttt 35805  T
Q  402 agctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    ||||||  || ||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||    
T  35804 agctttagttcaaaatagttgaagaatttaacggggttgtgagtttttgttttatataatttcta 35740  T

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Target: scaffold0003; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 466
Target Start/End: Complemental strand, 42559 - 42411
Alignment:
Q  320 aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat 417  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||||  || || ||||||||||||||| ||    ||| ||||||  || |||||    
T  42559 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 42460  T
Q  418 agttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  42459 agttgaagaacttaacggggttgtgagtttttgttttatataatttcta 42411  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 464
Target Start/End: Complemental strand, 41327100 - 41326935
Alignment:
Q  307 atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga 397  Q
    |||||||||||||||||||||||||| ||  |  ||||||||||||||     |||| ||||||||||| |||||||||||     || ||| ||||||     
T  41327100 atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt 41327001  T
Q  398 tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttc 464  Q
    |||| |||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  41327000 ttta-gctttggttaaaaattgttgaagaactaaacatggttgtgagtttctgtgttatataatttc 41326935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 307 - 475
Target Start/End: Complemental strand, 20910208 - 20910032
Alignment:
Q  307 atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga 397  Q
    |||||||||||||||||||||||||| ||  |  ||||||||||||||     |||| ||||||||||| |||||||||||     || ||| ||||||     
T  20910208 atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt 20910109  T
Q  398 tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagat 475  Q
    |||| |||||| |||||||| |||||||||||||||| || ||||||||||||| |||||||||||||  ||||||||    
T  20910108 ttta-gctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagat 20910032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 307 - 475
Target Start/End: Complemental strand, 20924656 - 20924480
Alignment:
Q  307 atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga 397  Q
    |||||||||||||||||||||||||| ||  |  ||||||||||||||     |||| ||||||||||| |||||||||||     || ||| ||||||     
T  20924656 atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt 20924557  T
Q  398 tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagat 475  Q
    |||| |||||| |||||||| |||||||||||||||| || ||||||||||||| |||||||||||||  ||||||||    
T  20924556 ttta-gctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagat 20924480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 320 - 466
Target Start/End: Original strand, 27444802 - 27444947
Alignment:
Q  320 aattgggttttcaagtgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaata 418  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||  || || ||||||||||||||| ||    ||| |||||   || ||||||    
T  27444802 aattgggttttcaagg--tgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagcttcagttcaaaata 27444899  T
Q  419 gttgaagaactaaacagggttgtgagtttctgttttatataatttcta 466  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  27444900 gttgaagaacttaacggggttgtgagtttttgttttatataatttcta 27444947  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 11382861 - 11382899
Alignment:
Q  288 ggcaactatttagcgtagaatcaaaatagagcaattggg 326  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  11382861 ggcaactatttggtgtagaatcaaaatagagcaattggg 11382899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 465
Target Start/End: Complemental strand, 42313324 - 42313158
Alignment:
Q  307 atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga 397  Q
    |||||||||||||||||||||||||| ||  |  |||||||||||| |     |||| ||||||||||| |||||||||||     || ||| ||||||     
T  42313324 atcaaaatagagcaattgggttttcaggttttacagttttgaaccagttggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt 42313225  T
Q  398 tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttct 465  Q
    |||| |||||| |||||||| |||||||||||||||| | |||||||||||||| |||||||||||||    
T  42313224 ttta-gctttggttaaaaattgttgaagaactaaacatgattgtgagtttctgtgttatataatttct 42313158  T

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Target: scaffold0096 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 453
Target Start/End: Original strand, 28836 - 28912
Alignment:
Q  377 ttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttt 453  Q
    |||||||||||||||||||| ||  | ||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  28836 ttaatttttgttttgaaaagtttctacctttagttaaaaatagttgaagaactaaatggggttgtgagtttctgttt 28912  T

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