View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_19 (Length: 482)
Name: NF2662_high_19
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 5 - 466
Target Start/End: Original strand, 10988097 - 10988558
Alignment:
| Q |
5 |
gagaagcataggctctatacgacatccatctcccaactccaactccgaaagagttttgaagtagccatcaacatagaaagaattctcgtaccgtgaatac |
104 |
Q |
| |
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||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10988097 |
gagaaacataagctctatacgacatccatctctcaaccccaactccgaaagagttttgaagtagccatcaacatagaaagaattctcgtaccgtgaatac |
10988196 |
T |
|
| Q |
105 |
aaactactattcctacagttatctctgtatatgtaaccagcctggttcggacagctcacatgcaacataaatttcgtcaatatattgcggaacgaatagn |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| | |
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| T |
10988197 |
aaactactattcctacagttatctctgtatatgtaaccagcctggttcggacagctcacatgcaacataagtttcgtcaatctattgctcaacgaattgt |
10988296 |
T |
|
| Q |
205 |
nnnnnnctagataaggtacgtagatatttgaggtgaaaaaaggactgaaatcactaggagggatggagttattagaaagaatattgaaatacgatagttg |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10988297 |
ttttttctagataaggtacgtagatatttgaggtgaaaaaaggactgaaatcactaggagggatggagttattagaaagaatattgaaatacgatagttg |
10988396 |
T |
|
| Q |
305 |
gatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10988397 |
gatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtac |
10988496 |
T |
|
| Q |
405 |
ctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10988497 |
ctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
10988558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 5 - 466
Target Start/End: Original strand, 11019265 - 11019726
Alignment:
| Q |
5 |
gagaagcataggctctatacgacatccatctcccaactccaactccgaaagagttttgaagtagccatcaacatagaaagaattctcgtaccgtgaatac |
104 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019265 |
gagaaacataagctctatacgacatccatctctcaaccccaactccgaaagagttttgaagtagccatcaacatagaaagaattctcgtaccgtgaatac |
11019364 |
T |
|
| Q |
105 |
aaactactattcctacagttatctctgtatatgtaaccagcctggttcggacagctcacatgcaacataaatttcgtcaatatattgcggaacgaatagn |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| | |
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| T |
11019365 |
aaactactattcctacagttatctctgtatatgtaaccagcctggttcggacagctcacatgcaacataagtttcgtcaatctattgctcaacgaattgt |
11019464 |
T |
|
| Q |
205 |
nnnnnnctagataaggtacgtagatatttgaggtgaaaaaaggactgaaatcactaggagggatggagttattagaaagaatattgaaatacgatagttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11019465 |
ttttttctagataaggtacgtagatatttgaggtgaaaaaaggactgaaatcactaggagggatggagttattagaaagaatattgaaatacgatagttg |
11019564 |
T |
|
| Q |
305 |
gatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019565 |
gatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtac |
11019664 |
T |
|
| Q |
405 |
ctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11019665 |
ctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
11019726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 281 - 463
Target Start/End: Complemental strand, 11000033 - 10999851
Alignment:
| Q |
281 |
aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattg |
380 |
Q |
| |
|
|||| ||||||||| | ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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|
| T |
11000033 |
aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcg |
10999934 |
T |
|
| Q |
381 |
ttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatg |
463 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10999933 |
ttgtcctcacatgataagatgtacctattgtcaccacagttttcgggactgtctttcaatcggaaagggtggcttatgttatg |
10999851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 312 - 463
Target Start/End: Complemental strand, 11002979 - 11002828
Alignment:
| Q |
312 |
aagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtacctattgt |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||| |||| |
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|
| T |
11002979 |
aagttattgtaattaattgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggttgttgtcctcacatgataagatgtaccttttgt |
11002880 |
T |
|
| Q |
412 |
caccacattttttgggactgtctttcaatcggaaagggtggctgatgttatg |
463 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11002879 |
caccacagttttcgggactgtctttcaatcggaaagggtggcttatgttatg |
11002828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 287 - 466
Target Start/End: Original strand, 11034918 - 11035097
Alignment:
| Q |
287 |
attgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcc |
386 |
Q |
| |
|
|||||||| | ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11034918 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccaaatgaatcatggtacaaaatcaattgattgttgtcc |
11035017 |
T |
|
| Q |
387 |
tcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
466 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| ||| |||||||||||||| |||||||| |||||||||||||| |
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|
| T |
11035018 |
tcacatgataggttgtacctttcgtcgccacattctttaggactgtctttcaagcggaaaggagacctgatgttatgaac |
11035097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 463
Target Start/End: Original strand, 10905515 - 10905669
Alignment:
| Q |
306 |
atggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattgttgtcctcacatgataggttgtacc |
405 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||||||||| |||| || |||||| ||||| | ||||||||||||||| | |||||| |
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| T |
10905515 |
atggtgaaattgttgtaattaattgattgtacataatattttccaaatgatccatagttcaaaattaattg---gctgtcctcacatgataagatgtacc |
10905611 |
T |
|
| Q |
406 |
tattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatg |
463 |
Q |
| |
|
| ||||||||||| | |||||||||||| ||||| |||||||||||||||||| |||| |
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|
| T |
10905612 |
ttttgtcaccacagtgtttgggactgtcattcaaccggaaagggtggctgatgctatg |
10905669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 466
Target Start/End: Original strand, 11009505 - 11009693
Alignment:
| Q |
287 |
attgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaa-------tgaac--catggtacaaaatcaattga |
377 |
Q |
| |
|
|||||||| | ||||| | ||||| ||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||| |
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|
| T |
11009505 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccatggtattcttcaaattcatagtacaaaatcaattgg |
11009604 |
T |
|
| Q |
378 |
ttgttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaac |
466 |
Q |
| |
|
|| |||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11009605 |
ttattgtcctcacatgataggatgtaccttttgtcaccacacttttcaggactgtctttcaatcggaaagggtggctgatgctatgaac |
11009693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 362 - 466
Target Start/End: Original strand, 10922141 - 10922245
Alignment:
| Q |
362 |
gtacaaaatcaattgattgttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgtta |
461 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| | |||| || ||||||||||| ||||| |||||||||||||| |||||||| ||||||||| |
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|
| T |
10922141 |
gtacaaaatcaactggttgttgtcctcacatgataagatgtatcttttgtcaccacactttttaggactgtctttcaagcggaaaggagacctgatgtta |
10922240 |
T |
|
| Q |
462 |
tgaac |
466 |
Q |
| |
|
||||| |
|
|
| T |
10922241 |
tgaac |
10922245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 463
Target Start/End: Original strand, 10975634 - 10975733
Alignment:
| Q |
362 |
gtacaaaatcaattgattgttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgtta |
461 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| | | ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
10975634 |
gtacaagatcaattggttgttgtcctcacatgataagatatacctcttgtcaccag--tgtttgggactgtctttcagccggaaagggtggctgatgtta |
10975731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 10975569 - 10975612
Alignment:
| Q |
306 |
atggtaaagttgttgtaattaattgattgtacatagtattttcc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10975569 |
atggtaaagttgttgtaattaattgattgtacataatattttcc |
10975612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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