View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_20 (Length: 473)
Name: NF2662_high_20
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 41884667 - 41885107
Alignment:
| Q |
18 |
aaataaaagacatagagtaagagagtggagtttgttaggttcaagtttgagggggatagtttctgatcgactgttaaagggcttaacattgaatttataa |
117 |
Q |
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| T |
41884667 |
aaataaaagacatagagtaagagagtggagtttgttaggttcaattttgagggggatagtttctgatcgactgttaaagggcttaacattgaatttataa |
41884766 |
T |
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| Q |
118 |
aagaggtgactcatattttcaatgacatggatcattatctctacaattgcattgtcaagttttgctatgaagtttgacatgaagaattttgatggatgaa |
217 |
Q |
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| T |
41884767 |
aagaggtgactcatattttcaatgacatggatcattatctctacaattacattgtcaagttttgctatgaagtttgacatgaagaattttgatggatgaa |
41884866 |
T |
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| Q |
218 |
tcaatttcgcttgtgaaaaattaaagtcaaaggtgtattcattcaattaagattagataaggtgtttaattatacatgagcatttatcgacatttgtgcg |
317 |
Q |
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| T |
41884867 |
tcaatttcgcttgtgaaaaattaaagtcaaaggtgtattcattcaattaagattagataaggtgtttaattatacatgagcatttatcgacatttgtgcg |
41884966 |
T |
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| Q |
318 |
agatgtgatgcgatatcatgttgaatattgatgaaaaacttcgcaacatgaaagttgcaccataattttttaatctaattttagtttcaagtaaagtata |
417 |
Q |
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| T |
41884967 |
agatgtgatgcgatattatgttgaatattgatgaaaaacttcgcaacatgaaagttgcaccatagttttttagtctaattttagtttcaagtaaagtata |
41885066 |
T |
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| Q |
418 |
ttc-ttttgttacaattacaatatgatagttctttcgaact |
457 |
Q |
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| T |
41885067 |
ttctttttgttacaattacaatatgatagttctttcgaact |
41885107 |
T |
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