View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_21 (Length: 470)
Name: NF2662_high_21
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 39136526 - 39136071
Alignment:
| Q |
19 |
acactggagacagaagaaggacagacaatattgaagaagatgggaatgggagtgggctgttttcctcaaaaattaatttcctatatcacccacatttcct |
118 |
Q |
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| T |
39136526 |
acactggagacagaagaagtacagacaatattgaagaagatgggaatgggagtgggctgttttcctcaaaaattaatttcctatatcacccacatttcct |
39136427 |
T |
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| Q |
119 |
aaatatatgtactttccattctccaacaaatatgcttcttcctaattactatactacccctcccctgaagagtcaataccaccaagcttctctatggtca |
218 |
Q |
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| T |
39136426 |
aaatatatgtactttccattctccaacaaatatgcttcttcctaattactatactacccctcccctcaagagtcaataccaccaagcttctctatggtca |
39136327 |
T |
|
| Q |
219 |
aagtttgtttgacgcatttacgaagtttacattcttgatcgttgaattaagattagat----------agacattttgttttaacgtatttacgatgttt |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39136326 |
aagtttgtttgacgcatttacgaagtttgcattcttgatcgttgaattaagattagatgagatgatgaagacattttgttttaacgtatttacgatgttt |
39136227 |
T |
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| Q |
309 |
acatttctgatcgttgaattaagattagacgatgaagactttttatttaaattagttaagaaaacgttgaaatttaaattctttcactttggtcgaaaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
39136226 |
acatttctgatcgttgaattaagattagacgatgaagactttttatttaaattagttaagaacacgttgaaatttaaattctttcactttggtccaaaaa |
39136127 |
T |
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| Q |
409 |
tcacgtatacatcgaatgtgtcaaattttgagtgcggataatctgattttcttcga |
464 |
Q |
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| T |
39136126 |
ccacgtatacatcgaatgtgtcaaattttgagtgcggataatctgatttccttcga |
39136071 |
T |
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