View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_high_22 (Length: 457)

Name: NF2662_high_22
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_high_22
NF2662_high_22
[»] chr6 (6 HSPs)
chr6 (107-199)||(31397653-31397744)
chr6 (363-438)||(31376712-31376787)
chr6 (183-254)||(31397688-31397758)
chr6 (110-178)||(31997217-31997285)
chr6 (48-89)||(31644267-31644308)
chr6 (307-353)||(31397810-31397856)
[»] chr1 (1 HSPs)
chr1 (359-438)||(30367004-30367083)
[»] chr8 (1 HSPs)
chr8 (110-173)||(33356956-33357019)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 31397653 - 31397744
Alignment:
Q  107 tcttagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcattttaatcccaatagcaaattctagttgaa 199  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||    
T  31397653 tcttagaaatatagttgaaatcaatagttaaaagaagcaaattctagttggactagatttgtattttaat-cgaaaagcaaattctagttgaa 31397744  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 31376787 - 31376712
Alignment:
Q  363 tcatttacttctactattggcgacacaatggcggtgaaattatgccgaaatggccaatagttggtatgctactgtc 438  Q
    |||||||| |||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||    
T  31376787 tcatttacatctactattggcgacacaatggcggtgagattatgatgaattggccaatagttggtatgctactgtc 31376712  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 31397688 - 31397758
Alignment:
Q  183 agcaaattctagttgaactagatatgtattttaatcccaaaagcaaactctagttgaattcaatacttatat 254  Q
    ||||||||||||||| ||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  31397688 agcaaattctagttggactagatttgtattttaatcg-aaaagcaaattctagttgaattcaatacttatat 31397758  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 31997217 - 31997285
Alignment:
Q  110 tagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcattttaatcc 178  Q
    |||||||||||||||||| |||| ||||||||||| ||||  |||||||||||||||| || |||||||    
T  31997217 tagaaatatagttgaattcaataattaaaagaagcgaatttgagttggactagatttgtatgttaatcc 31997285  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 31644308 - 31644267
Alignment:
Q  48 taaagtgtaattaaaccttataaaaatatcatttaactttta 89  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  31644308 taaagtgtaattaaaccttataaaaataccattttactttta 31644267  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 31397810 - 31397856
Alignment:
Q  307 ctacatcagtaaggttcgttagaaaaattagactgctctacctgcca 353  Q
    |||||||||| ||||| |||  |||||||||||||||||||||||||    
T  31397810 ctacatcagtcaggttggttccaaaaattagactgctctacctgcca 31397856  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 30367004 - 30367083
Alignment:
Q  359 ttcttcatttacttctactattggcgacacaatggcggtgaaattatgccgaaatggccaatagttggtatgctactgtc 438  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  30367004 ttcttcatttacatctactataggcgacacaatggcggtgagattatgccgaattggccaatagttggtatgctattgtc 30367083  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 33357019 - 33356956
Alignment:
Q  110 tagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcatttt 173  Q
    |||| |||||||| |||| |||| |||||||||||| ||| ||||||||||| ||||| |||||    
T  33357019 tagacatatagttaaatttaataattaaaagaagcagattttagttggactaaatttgtatttt 33356956  T

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