View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_23 (Length: 450)
Name: NF2662_high_23
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Original strand, 3549894 - 3550314
Alignment:
| Q |
21 |
atcagaacataaaattcttgatctcaagaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggt |
120 |
Q |
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| T |
3549894 |
atcagaacataaaattcttgatctcaagaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggt |
3549993 |
T |
|
| Q |
121 |
tctgctgtgagtttggagaaaagagaactctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcat |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3549994 |
tctgctgtgagtttggagaaaagagagctctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcctggacttccacaatcttcat |
3550093 |
T |
|
| Q |
221 |
tggatataagcaaaatccaattcaacggggtaagaatatttcctgtatgcatcttgatctcttcaattacaatgttgcataaacttttggcaattcttaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3550094 |
tggatataagcaaaatccaattcaacggggtaagaatatttcctgcacgcatcttgatctcttcaattacaatgttgcataaacttttggcaattctcaa |
3550193 |
T |
|
| Q |
321 |
aataaaatcatactattaatataacaagtattatcggagatgtaggcacaaccgcactttttgtttgtgtttataaatacgttttcttaagagccggatt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3550194 |
aataaaatcatactattaatataacaagtattatcggagatgtaggcacaaccacactttttgtttgtgtttattaatacgttttcttaagagccggatt |
3550293 |
T |
|
| Q |
421 |
ttctgttctaacaagtattat |
441 |
Q |
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| T |
3550294 |
ttctgttctaacaagtattat |
3550314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 43811515 - 43811280
Alignment:
| Q |
21 |
atcagaacataaaattcttgatctcaagaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggt |
120 |
Q |
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||||||||||||| | | ||||||||||||| |||||| ||||||||||||||||||| | |||| ||||||||||||||| |||||| || |||||| |
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| T |
43811515 |
atcagaacataaagtcgtagatctcaagaataaaattgaagcatcaatagtgatttggaagcggaaaatgaaccaaaaagataacaaatctgcttggggt |
43811416 |
T |
|
| Q |
121 |
tctgctgtgagtttggagaaaagagaactctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcat |
220 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| | || || || || || || |||| |||||||||| |
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| T |
43811415 |
tctgctgtaagtttggaaaaaagagagctctttgaagagagagcggaaaccatcttacttctaataaagcaccgattccctggcattcctcaatcttcat |
43811316 |
T |
|
| Q |
221 |
tggatataagcaaaatccaattcaacggggtaagaa |
256 |
Q |
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| T |
43811315 |
tggatataagcaaaatccaattcaacagggtaagaa |
43811280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 32997303 - 32997191
Alignment:
| Q |
134 |
tggagaaaagagaactctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcattggatataagcaa |
233 |
Q |
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||||||| ||||||||||||||||||||||||||||| || || | | | ||||| |||||| ||||||||||| |||||| | ||||| ||||| |
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| T |
32997303 |
tggagaagagagaactctttgaagagagagcagaaacaatattgttgatgatcaaacaagagtttccaggacttccacagtcttcacttgatatcagcaa |
32997204 |
T |
|
| Q |
234 |
aatccaattcaac |
246 |
Q |
| |
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|||||||| |||| |
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| T |
32997203 |
aatccaatacaac |
32997191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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