View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_24 (Length: 448)
Name: NF2662_high_24
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 11919772 - 11919403
Alignment:
| Q |
14 |
ttctggcgtgtgttgaggataaggacgaaatggtgttcttcgacttttaggcggcaccctccgtatgggcactttgtccttatcttgacttatggtggtc |
113 |
Q |
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| T |
11919772 |
ttctggcgtgtgttgaggataaggacgaaatggtgttcttcgacttttaggcggcaccctccgtatgggcactttgtccttatcttgacttatggtggtc |
11919673 |
T |
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| Q |
114 |
catatcccctagacacgagtcctgaataagggttaagtgttgtggaaattagggtagtccacaaccccc-aagcacgagttctgaataagggcaaagtgg |
212 |
Q |
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| T |
11919672 |
catatcccctagacacgagtcctgaataagggttaactgctgcggaaattatggtagtccacaaccccccaagcatgagtcctgaataagggcaaagtgg |
11919573 |
T |
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| Q |
213 |
cttggggaaattttggcggtccaaatgttaaaggaaagtatataaagataatatttgatggattaatttttatatatttttcaacaaccggatccaaaaa |
312 |
Q |
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| T |
11919572 |
tttggggaaattttggcggtccaaatgttaaaggaaagtatataaagataatatttgatggattaatttttatatatttttcaacaaccggatccaaaaa |
11919473 |
T |
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| Q |
313 |
cttgaatagtggtgttatgtctttggtttactacaaatcatactaatataaaaaatgaactgatacaaac |
382 |
Q |
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| T |
11919472 |
cttgaatagtggtgttatgtctttggtttgctacaaatcacattaatataaaaaatgaactgatacaaac |
11919403 |
T |
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