View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_26 (Length: 422)
Name: NF2662_high_26
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 42270102 - 42270509
Alignment:
| Q |
1 |
gtatacatagtacatttttatttgtctaaaaagtagtgaaaatttaacatgcttggttattataaagtaaaactagcagccctaaacaccgtagtagcaa |
100 |
Q |
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| T |
42270102 |
gtatacatagtacatttttatttgtctaaaaagtagtgaaaatttaacatggttggttattataaagtaaaactagcagccctaaacaccgtagtagcaa |
42270201 |
T |
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| Q |
101 |
acttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgttagtggaaaaactcggttgcatattttattgtctcccctataat |
200 |
Q |
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| T |
42270202 |
acttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgttagtggaaaaactcggttgcatattttattgtctcccctataat |
42270301 |
T |
|
| Q |
201 |
tgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaattcccaccccacaaggccacaacaacgattaaagaaacaaatt |
300 |
Q |
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| T |
42270302 |
tgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaattcccaccccacaaggccacaacaacgattaaagaaacaaatt |
42270401 |
T |
|
| Q |
301 |
aagagagattatacatacatatacactcctacctaggtccattccatcaattaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaat |
400 |
Q |
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| T |
42270402 |
aagagagattatacatacatatacactcctacttaggtccattccaccaattaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaat |
42270501 |
T |
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| Q |
401 |
acataaag |
408 |
Q |
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|||||||| |
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| T |
42270502 |
acataaag |
42270509 |
T |
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