View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_29 (Length: 389)
Name: NF2662_high_29
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_29 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 14874512 - 14874877
Alignment:
| Q |
1 |
aaaatcaataggataggcagggtcggccttaggttaaggccatcgaaccccttgctttaggccgaccaacaaaataatatttttcattagattagtttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14874512 |
aaaatcaataggataggcagggtcggccttaggttaaggccatcgaaccccttgctttaggccgaccaacaaaataatatttttcattagattagtttaa |
14874611 |
T |
|
| Q |
101 |
gagataccttggtttaaaattttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaactatacctgaataagcagcaatggagtgtt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14874612 |
gagataccttggttt-----tttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaactatacctgaataagcagcaatggagtgtt |
14874706 |
T |
|
| Q |
201 |
aagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgca |
300 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14874707 |
aagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgca |
14874806 |
T |
|
| Q |
301 |
tcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14874807 |
tcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
14874877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 170 - 374
Target Start/End: Original strand, 14879962 - 14880166
Alignment:
| Q |
170 |
actatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagt |
269 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| |
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| T |
14879962 |
actatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagc |
14880061 |
T |
|
| Q |
270 |
atcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
369 |
Q |
| |
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|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14880062 |
atcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
14880161 |
T |
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| Q |
370 |
aatct |
374 |
Q |
| |
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||||| |
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| T |
14880162 |
aatct |
14880166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 171 - 374
Target Start/End: Complemental strand, 14757400 - 14757197
Alignment:
| Q |
171 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
14757400 |
ctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
14757301 |
T |
|
| Q |
271 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
370 |
Q |
| |
|
||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14757300 |
tcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttccctta |
14757201 |
T |
|
| Q |
371 |
atct |
374 |
Q |
| |
|
|||| |
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|
| T |
14757200 |
atct |
14757197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 14769473 - 14769674
Alignment:
| Q |
173 |
atacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatc |
272 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||||| ||| |
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| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
|
| Q |
273 |
acccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
372 |
Q |
| |
|
||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
14769672 |
T |
|
| Q |
373 |
ct |
374 |
Q |
| |
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|| |
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|
| T |
14769673 |
ct |
14769674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 14789521 - 14789723
Alignment:
| Q |
172 |
tatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| | |
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| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
|
| Q |
272 |
cacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
371 |
Q |
| |
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|||| || | || || |||||||| |||||||||||||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||| |
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| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttcccttaa |
14789720 |
T |
|
| Q |
372 |
tct |
374 |
Q |
| |
|
||| |
|
|
| T |
14789721 |
tct |
14789723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 174 - 368
Target Start/End: Original strand, 91636 - 91830
Alignment:
| Q |
174 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |||| || |||||||||||||||| | |||| |
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|
| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
274 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccct |
368 |
Q |
| |
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|| || | ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |
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|
| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccct |
91830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 230 - 374
Target Start/End: Complemental strand, 14857695 - 14857551
Alignment:
| Q |
230 |
aaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctcc |
329 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||| |||||| || ||||| | ||||||| |||||||||||||||||||||| |||||| | |
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|
| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
|
| Q |
330 |
agtgcaatccaccataagtttcctaccaggaccttcccttaatct |
374 |
Q |
| |
|
| | ||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
14857595 |
attacaatctaccataagcttcctaccaggaccttcccttaatct |
14857551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 13466048 - 13466088
Alignment:
| Q |
49 |
cccttgctttaggccgaccaacaaaataatatttttcatta |
89 |
Q |
| |
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|||| ||||||||||||| ||||||||| |||||||||||| |
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|
| T |
13466048 |
ccctcgctttaggccgactaacaaaatattatttttcatta |
13466088 |
T |
|
Back To:
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