View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_3 (Length: 829)
Name: NF2662_high_3
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_3 |
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| [»] chr8 (7 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 497 - 829
Target Start/End: Original strand, 34584545 - 34584871
Alignment:
| Q |
497 |
ggataagtggactgtacaagaaaacaggacttaaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
596 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584545 |
ggataagtggactgttcaagaaaacaggacttaaaaag------tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
34584638 |
T |
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| Q |
597 |
tgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgctgatgc |
696 |
Q |
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| T |
34584639 |
tgtatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttttattcagttgaagagtgtttactcatacttgctgatgc |
34584738 |
T |
|
| Q |
697 |
ccattggtttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagg |
796 |
Q |
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| T |
34584739 |
ccatttgtttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagg |
34584838 |
T |
|
| Q |
797 |
gttcaacaaagatgaaaatgttgttcttgatct |
829 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
34584839 |
gttcaacaaagatgcaaatgttgttcttgatct |
34584871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 34582760 - 34583050
Alignment:
| Q |
14 |
agggaactgtttgagtttgcgtagaaggaaggttgttagtcactaaggcaacaacatggatccttcagggagttggcttcagaaggaaggtgcattttgc |
113 |
Q |
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| T |
34582760 |
agggaactgtttgagtttgcgaagaaggaaggttgttagtcactgaggcaacaaaatggatccttcagggagttggcttcagaaggaaggtgcattttgc |
34582859 |
T |
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| Q |
114 |
atgtttgttactatcatcagataagcggattgttcaaggaaacgagacttagaaagtggatatgaaaatgtgttctcaactaaatcaatatagttatcag |
213 |
Q |
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| T |
34582860 |
atgtttgttactatcatcagataagcggattgttcaaggaaacaagacttaaaaagtggatatgaaaatgtgttctcaactaaatca--atagttatcag |
34582957 |
T |
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| Q |
214 |
atcaatatttttgtacaaattttgtcatcatactaagatgtaagaaaattaattcacgagcatgaacatcaaccgtgtcaactatcttagtat |
306 |
Q |
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| T |
34582958 |
atcaatatttttgtacaaattttgtcatcatactaagatgtaagaaaattaattcacgagcatgaacatcaaccgtgtcaactatcttagtat |
34583050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 34583158 - 34583071
Alignment:
| Q |
406 |
ttgtcgactctttattagagttttgttgttatctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
493 |
Q |
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| T |
34583158 |
ttgtcgactctttattagagttttgttgttatctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
34583071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 529 - 694
Target Start/End: Original strand, 34586015 - 34586174
Alignment:
| Q |
529 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
624 |
Q |
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|||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||| ||||||||| ||||||||| || | |
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| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
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| Q |
625 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgctgat |
694 |
Q |
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| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgctgat |
34586174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34584402 - 34584482
Alignment:
| Q |
18 |
aactgtttgagtttgcgtagaaggaaggttgttagtcactaaggcaacaacatggatccttcagggagttggcttcagaag |
98 |
Q |
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| T |
34584402 |
aactgtttgagcttaaatagaaggaaggttgttagtcattgaggcaacaaaatggatcctacaaggagttggcttcagaag |
34584482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 34584907 - 34585016
Alignment:
| Q |
170 |
tggatatgaaaatgtgttctcaactaaatcaatatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaat |
266 |
Q |
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||||||||||||| |||| |||||| |||||||| || ||||||||||||||||| |||| ||||| ||||||||| |||||| |||||||||| | |
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| T |
34584907 |
tggatatgaaaatttgttttcaacttaatcaata--gtaatcagatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattact |
34585004 |
T |
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| Q |
267 |
tcacgagcatga |
278 |
Q |
| |
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||| |||||||| |
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| T |
34585005 |
tcatgagcatga |
34585016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 780 - 827
Target Start/End: Original strand, 34586432 - 34586480
Alignment:
| Q |
780 |
gtgaagttcttgaaagggttcaacaaagatgaaaat-gttgttcttgat |
827 |
Q |
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| T |
34586432 |
gtgaagttcttgaaagggttcaacaaagatgcaaatatttgttcttgat |
34586480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 580 - 718
Target Start/End: Original strand, 19179735 - 19179873
Alignment:
| Q |
580 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
677 |
Q |
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| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
|
| Q |
678 |
tactcatacttgctgatgcccattggtttgccttgctgatc |
718 |
Q |
| |
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||||||||||||||||||||| || |||||||||| |||| |
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| T |
19179833 |
tactcatacttgctgatgccctttactttgccttgcagatc |
19179873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 580 - 698
Target Start/End: Original strand, 1478115 - 1478233
Alignment:
| Q |
580 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
677 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| ||| |||||| |||||||| |
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| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
|
| Q |
678 |
tactcatacttgctgatgccc |
698 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1478213 |
tactcatacttgctgatgccc |
1478233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 744 - 829
Target Start/End: Complemental strand, 27016225 - 27016140
Alignment:
| Q |
744 |
ttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagggttcaacaaagatgaaaatgttgttcttgatct |
829 |
Q |
| |
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||||| ||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
27016225 |
ttggttcctctactaggacttgatgaatttttccaagtgaagttcttgaaagggttcaacaatgatgcaaatgttgttcttgatct |
27016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 705 - 776
Target Start/End: Complemental strand, 27016293 - 27016223
Alignment:
| Q |
705 |
ttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttg |
776 |
Q |
| |
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|||||||||||||||||||| | ||||| |||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
27016293 |
ttgccttgctgatccactttcc-attcaattttccttgcttggttcctctactaggacttgatggatttttg |
27016223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 27016102 - 27016028
Alignment:
| Q |
174 |
tatgaaaatgtgttctcaactaaatcaatatagttatcagatcaatatttttgtacaaattttgtcatcatactaaga |
251 |
Q |
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||||||||| |||| |||||| |||||||| || || | |||||||||||||||| ||||||| ||||||||||||| |
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| T |
27016102 |
tatgaaaatctgttttcaacttaatcaata--gtaattaaatcaatatttttgtac-aattttggcatcatactaaga |
27016028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 51201188 - 51201290
Alignment:
| Q |
176 |
tgaaaatgtgttctcaactaaatcaatatagttatcagatcaatatttttgtacaaattttgtcatcatactaagatgtaagaaaattaattcacgagca |
275 |
Q |
| |
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|||||||||||| |||| | |||| | ||||| ||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| || || |
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|
| T |
51201188 |
tgaaaatgtgttttcaaattaatcca-atagtaatcagataaatatttttgttcaatttttggcatcatactaagatgtaagaaaattacttcatgatca |
51201286 |
T |
|
| Q |
276 |
tgaa |
279 |
Q |
| |
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|||| |
|
|
| T |
51201287 |
tgaa |
51201290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 744 - 829
Target Start/End: Original strand, 51201065 - 51201151
Alignment:
| Q |
744 |
ttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagggttcaacaaagatgaaaatg-ttgttcttgatct |
829 |
Q |
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||||| ||| ||||||||| | ||||||||||||||||||| |||||||||||||||| ||| ||| ||| | ||||||||||||| |
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| T |
51201065 |
ttggtgcctctactaggacttaatggatttttgcaagtgaaattcttgaaagggttcagcaatgattcaaaggtttgttcttgatct |
51201151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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