View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_32 (Length: 372)
Name: NF2662_high_32
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_32 |
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| [»] scaffold0989 (1 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 7895671 - 7896028
Alignment:
| Q |
1 |
aacttcgtgtttaatataaaaccgttcatgcatttccacctaacaatttaagcttttgggaattgttcttgaacaaaagacaacttggccaaataggtaa |
100 |
Q |
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| T |
7895671 |
aacttcgtgtttaatataaaaccattcatgcatttccacctaacaatttaagcttttgggaatggttcttgaacaaaagacaacttggccaaataggtaa |
7895770 |
T |
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| Q |
101 |
agagcaataaagagaaagtgcaacacacaaaattgtaagttgtaactatctcttgccattgtattttcttt--cgctttctatttaccgttaacaaagga |
198 |
Q |
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| T |
7895771 |
agagcaataaagagaaagtgcaacacacaaaattgtaagttgtaactatctcttgccattgtattttctttggctctttctatttactgttaacaaagga |
7895870 |
T |
|
| Q |
199 |
aatataatcaagtacaatcaaacaacaatgacaacaaataggacttgtaacaattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaa |
298 |
Q |
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| T |
7895871 |
aatataatcaagtagaatcaaacaacactgacaacaaataggacttgtaacaattctcactttcaatgcaataaagcaaaataaatttaaaagcatccaa |
7895970 |
T |
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| Q |
299 |
acataatcattaccaagacacaatgttagtccactctagaatttgtccatataataat |
356 |
Q |
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| T |
7895971 |
acataatcattaccaagacacaatggtagtccactctagaatttgtccatataataat |
7896028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 14435302 - 14435362
Alignment:
| Q |
241 |
acttgtaacaattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaaaca |
301 |
Q |
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| T |
14435302 |
acttggaacaattctcactttcaatgcaatagagcaaaataaaatttaaagcatccaaaca |
14435362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 7793658 - 7793599
Alignment:
| Q |
212 |
acaatcaaacaacaatgacaacaaataggacttgtaacaattctcactttcaatgcaata |
271 |
Q |
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| T |
7793658 |
acaatcaaacaactcagacaacaaatagaacttaaaacaattctcactttcaatgcaata |
7793599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 7815793 - 7815738
Alignment:
| Q |
250 |
aattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaaacataat |
305 |
Q |
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| T |
7815793 |
aattctcactttcaatgtaatagagcaaaataaaattaaaagcatcgaaacataat |
7815738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 165 - 105
Alignment:
| Q |
241 |
acttgtaacaattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaaaca |
301 |
Q |
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| T |
165 |
acttggaacaattctcactttcaatgcaatagagcaaaataaaatttaaagcatccaaaca |
105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 28719792 - 28719856
Alignment:
| Q |
247 |
aacaattctcactttcaatgcaataatgcaaaataaattta-aaagcatccaaacataatcatta |
310 |
Q |
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| T |
28719792 |
aacaattgtcactttcaatgcaatagagcaaaataaagttataaagcatccaaacaaaatcatta |
28719856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 49181251 - 49181160
Alignment:
| Q |
3 |
cttcgtgtttaatataaaaccgttcatgcatttccacctaa-caatttaagcttttgggaattgttcttgaacaaaagacaacttggccaaa |
93 |
Q |
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| T |
49181251 |
cttcatgttcaatgtaaaaccattcatggatttccaccaaagcaacttaagcttttgggagtggttcttgaacatgtgacaacttggccaaa |
49181160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 417 - 477
Alignment:
| Q |
241 |
acttgtaacaattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaaaca |
301 |
Q |
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| T |
417 |
acttggaacaattctcactgacaatgcaatagagcaaaataaaattaagagcatccaaaca |
477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 2467184 - 2467275
Alignment:
| Q |
250 |
aattctcactttcaatgcaataatgcaaaataaatttaaaagcatccaaacataatcattaccaagacacaatgttagtccactctagaatt |
341 |
Q |
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| T |
2467184 |
aattctcccttccaatacaatagagcaaaataaaatttaaagcatccaaacggaattgttaataagacacaatggtagtctactctagaatt |
2467275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 43693232 - 43693332
Alignment:
| Q |
247 |
aacaattctcactttcaatgcaataatgcaaaataaatttaaaa----gcatccaaacataatcattaccaagacacaatgttagtccactctagaattt |
342 |
Q |
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| T |
43693232 |
aacaattctcactttcaatgcaataaagaaaactaaaatgaaaaccatgcatccaaacaaaataattatctagccacaatggcagtccaccctagaattt |
43693331 |
T |
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| Q |
343 |
g |
343 |
Q |
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| T |
43693332 |
g |
43693332 |
T |
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