View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_33 (Length: 366)
Name: NF2662_high_33
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 2698937 - 2698606
Alignment:
| Q |
19 |
tcaaaaattacgatcaacgatatatgcttgattagttaaaattatagtaaaagttaaataataaaagccataaagtcaatttgaaatatttttattttca |
118 |
Q |
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| T |
2698937 |
tcaaaaattatgatcaatgatatatgcttgattagttaaaattatagtaaaagttaaacaataaaagccacaaagtcaatttgaaatatttttattttca |
2698838 |
T |
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| Q |
119 |
ctatatttttacattgata--gagatacgtaaggtgttcttttatgtggttggcaaatgagaattgaattgttcaatttggtacagatcactattggacc |
216 |
Q |
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| T |
2698837 |
ctatatttttacattgatagagagatatgtaatgtgttcttttatgtggttggcaaatgagaattgaattgttcaatttggtacagatcactattggacc |
2698738 |
T |
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| Q |
217 |
atttatcacctagta-atagtatatatatgaaacctttgagattttgaaaattcagtttatatttaattgtgaacaaaatatcctaggtttcttccatca |
315 |
Q |
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| T |
2698737 |
atttatcacctagtatata-tatatatatgaaacctttgagattttgaaaattcagtttatatttaattgagaacaaaatatcctaggtttcttccatca |
2698639 |
T |
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| Q |
316 |
acaattcagtttcttccaatatgtcagaaaaagtt |
350 |
Q |
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| T |
2698638 |
acaactcagtttcttcca--atgtcagaaaaagtt |
2698606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 10840121 - 10840077
Alignment:
| Q |
236 |
tatatatatgaaacctttgagattttgaaaattcagtttatattt |
280 |
Q |
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| T |
10840121 |
tatatatatcaaacctttgagattttgaatcttcaatttatattt |
10840077 |
T |
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