View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2662_high_45 (Length: 294)
Name: NF2662_high_45
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 1011084 - 1011352
Alignment:
| Q |
16 |
ttatgctcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011084 |
ttatgctcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatga |
1011183 |
T |
|
| Q |
116 |
aaatcatgttgaaacatatcaaagtttgatagagaaggaaaaagctaacaataattcaaaattggatttgccatcatcattatttctcaacctacaatac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011184 |
aaatcatgttgaaacatatcaaagtttgatagagaaggaaaaagctaacaataattctaaattggatttgccatcatcattatttctcaacctacaatac |
1011283 |
T |
|
| Q |
216 |
caaccaaatttacctgagaaattttttcactgtgatcatagtcaagctcttatcattaaggttcctttg |
284 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011284 |
cgaccaaatttacctgagaaattttttcactgtgatcatagtcaagctcttatcattaaggttcctttg |
1011352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 1036149 - 1036254
Alignment:
| Q |
34 |
ggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatcatgttgaaacata |
133 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| | | |||||||||||| ||| ||| ||||| ||||||| |
|
|
| T |
1036149 |
ggaaagacaaagaaggtttattttgtgaaccatttttgaattcaacttggttgttaccaaacgactctcctttttgggatgcaaacgatgttaaaacata |
1036248 |
T |
|
| Q |
134 |
tcaaag |
139 |
Q |
| |
|
|||||| |
|
|
| T |
1036249 |
tcaaag |
1036254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 6938676 - 6938573
Alignment:
| Q |
36 |
aaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatcatgttgaaacatatc |
135 |
Q |
| |
|
||||||||| ||||| ||||||| || || ||| ||||||| |||||||||||||||||||| |||||||||||||||| | | | ||| ||||||||| |
|
|
| T |
6938676 |
aaagacaaagaaggtttattttgcgaaccatttctgaattcgacttggttgttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacatatc |
6938577 |
T |
|
| Q |
136 |
aaag |
139 |
Q |
| |
|
|||| |
|
|
| T |
6938576 |
aaag |
6938573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University