View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_47 (Length: 286)
Name: NF2662_high_47
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 36692042 - 36691787
Alignment:
| Q |
13 |
atgaacaaaatgttacctgtgcagttgatagataaaagaatacaggtaatccattaatctcagtgatcaaatgcaaatgtttttatggatatctatactc |
112 |
Q |
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| T |
36692042 |
atgaacaaaatgttacctgtgcagttgatagataaaagaatacaggtaatccattaatctcactgatcaaatgcaaatgtttttatggatatctatactc |
36691943 |
T |
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| Q |
113 |
ataaaataacataatattgttgtctgttatgnnnnnnnggtatggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcaca |
212 |
Q |
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| T |
36691942 |
ataaaataacataatattgttgtctgttatgtttttttggtatggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcaca |
36691843 |
T |
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| Q |
213 |
aaattctatcatgcaacgcaatactttagtaaggacaatgtcattggggtgggagt |
268 |
Q |
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| T |
36691842 |
aaattctatcatgcaacgcaatactttagtaaggacaatgtcattggggtgggagt |
36691787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 23655582 - 23655468
Alignment:
| Q |
154 |
atggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcacaaaattctatcatgcaacgcaatactttagtaaggacaatgt |
253 |
Q |
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| T |
23655582 |
atggatgacttcaccagatcagtaaagttggacgattgacttatagaatgaacttcacaaaactttgtcatgcaaccaaatattttagcttggacaatgt |
23655483 |
T |
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| Q |
254 |
cattggggtgggagt |
268 |
Q |
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| T |
23655482 |
cattggtgttggagt |
23655468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 23802988 - 23803102
Alignment:
| Q |
154 |
atggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcacaaaattctatcatgcaacgcaatactttagtaaggacaatgt |
253 |
Q |
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|||||||| ||| ||||||| |||||||||||| ||| |||||| ||||||||||||||| | | ||||||||| |||| ||||| ||||||||| |
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| T |
23802988 |
atggatgacttcaccagatcagtaaagttggacgattgacttatagaatgaacttcacaaaactttgtcatgcaaccaaatattttagcttggacaatgt |
23803087 |
T |
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| Q |
254 |
cattggggtgggagt |
268 |
Q |
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|||||| || ||||| |
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| T |
23803088 |
cattggtgttggagt |
23803102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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