View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_high_5 (Length: 789)

Name: NF2662_high_5
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_high_5
NF2662_high_5
[»] chr7 (3 HSPs)
chr7 (405-778)||(42022513-42022886)
chr7 (17-335)||(42022953-42023271)
chr7 (412-474)||(22620810-22620874)
[»] chr5 (1 HSPs)
chr5 (410-546)||(41364575-41364711)
[»] scaffold0178 (2 HSPs)
scaffold0178 (431-549)||(6090-6208)
scaffold0178 (497-548)||(6710-6761)
[»] chr2 (4 HSPs)
chr2 (489-548)||(44512408-44512467)
chr2 (287-337)||(45134621-45134671)
chr2 (279-337)||(11927124-11927182)
chr2 (462-548)||(36866091-36866177)
[»] scaffold0332 (1 HSPs)
scaffold0332 (279-337)||(12116-12174)
[»] chr6 (1 HSPs)
chr6 (419-492)||(1825865-1825938)
[»] chr4 (2 HSPs)
chr4 (419-477)||(24899322-24899380)
chr4 (441-474)||(14271045-14271078)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 405 - 778
Target Start/End: Complemental strand, 42022886 - 42022513
Alignment:
Q  405 atttgatcaatcacttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  42022886 atttgatcaatcacttatttatagttttgatattctaatgactcatcacaatggaactctctagatccttctagagagcatgactcatcacctaatataa 42022787  T
Q  505 cttggacttatactatcctaatggacctatcttagatcattacacagatcctctcctacgagattttaaaagattaggtttggatcctctcgtacgattt 604  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42022786 cttgaacttatactattctaatggacctatcttagatcattacacagatcctctcctacgagattttaaaagattaggtttgaatcctctcgtacgattt 42022687  T
Q  605 atctatatannnnnnncctctaacttcctcttaaaaattctctctttcataatcatcttttcattttccctcttattctccctcatctcactcacattat 704  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42022686 atctatatattttttcgctctaacttcctcttaaaaattctctctttcataatcatcttttcattttccctcttattctccctcgtctcactcacattat 42022587  T
Q  705 ttttgttggagaatgatgcaagaagcataagaggatccaagttctaaattgaccttgatatcgtttttatcttc 778  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42022586 ttttgttggagaatgatgcaagaagcataagaggatccaagttctaaattgaccttgatatcgtttttatcttc 42022513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 42023271 - 42022953
Alignment:
Q  17 acaacactgatgtaagtaactaccatggttgttgtgttaaaaccctcaaccgtttgttggctaagttatttacttttatcgcaaccaaccttccacaacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42023271 acaacactgatgtaagtaactaccatggttgttgtgttaaaaccctcaaccgtttgttggctaagttatttacttttatcgcaaccaaccttccacaacc 42023172  T
Q  117 caattatcaaggaagcatgctaattgagggcaaaaataaacttttgagatggctcattgtctgtcagttggtcaattatcaactattaatgttctctaca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  42023171 caattatcaaggaagcatgctaattgagggcaaaaataaacttttgagatggctcattgtctgtcagttagccaattatcaactattaatgttctctaca 42023072  T
Q  217 tccctattgttaagggaccggttgttatccatatttttacttctatgagatggggttcagattgttatggacaacttttgggttgtttataaatgaaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42023071 tccctattgttaagggaccggttgttatccatatttttacttctatgagatggggttcagattgttatggacaacttttgggttgttcataaatgaaaga 42022972  T
Q  317 gatgatattctaaaagaga 335  Q
    |||||||||||||||||||    
T  42022971 gatgatattctaaaagaga 42022953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 22620810 - 22620874
Alignment:
Q  412 caatcacttatttatagttttgatattcta--atgactcatcacaatggatctctctagatcctt 474  Q
    ||||||||||||||||   |||||||||    |||||||||||||||| ||||||||||||||||    
T  22620810 caatcacttatttataaccttgatattcacctatgactcatcacaatgaatctctctagatcctt 22620874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 410 - 546
Target Start/End: Complemental strand, 41364711 - 41364575
Alignment:
Q  410 atcaatcacttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataacttgg 509  Q
    ||||||||||| |||||||  ||||||||||||||| |||||||||  ||| ||||||||||||| || ||||||||| |||||| ||||||||||||||    
T  41364711 atcaatcacttctttatagccttgatattctaatgattcatcacaaaagatttctctagatccttctaaagagcatgactcatcatctaatataacttgg 41364612  T
Q  510 acttatactatcctaatggacctatcttagatcatta 546  Q
    ||||| ||||| ||||||| |||||| ||||||||||    
T  41364611 acttacactattctaatgggcctatcatagatcatta 41364575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 431 - 549
Target Start/End: Complemental strand, 6208 - 6090
Alignment:
Q  431 ttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggac 530  Q
    ||||||||  ||||||||||||  | |||||| | |||||| |||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | |    
T  6208 ttgatatttcaatgactcatcatcaaggatctttttagatcattttagagagtatgactcatcacctaatataacttgaacttatactattctaataggc 6109  T
Q  531 ctatcttagatcattacac 549  Q
    || |||||||| |||||||    
T  6108 ctttcttagattattacac 6090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 548
Target Start/End: Original strand, 6710 - 6761
Alignment:
Q  497 taatataacttggacttatactatcctaatggacctatcttagatcattaca 548  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  6710 taatataacttggacttatactattctaatggatctatcttagatcattaca 6761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Complemental strand, 44512467 - 44512408
Alignment:
Q  489 tcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca 548  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||    
T  44512467 tcatcacctaatataacttggacttataatattctaatggacctatcttgaatcattaca 44512408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 45134621 - 45134671
Alignment:
Q  287 acaacttttgggttgtttataaatgaaagagatgatattctaaaagagaga 337  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  45134621 acaacttttgggttgtttataaatgagagagataatattctaaaagagaga 45134671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 11927182 - 11927124
Alignment:
Q  279 tgttatggacaacttttgggttgtttataaatgaaagagatgatattctaaaagagaga 337  Q
    ||||||||| ||| ||| ||||||| ||||||||||||||| |||||||||||||||||    
T  11927182 tgttatggaaaaccttttggttgttcataaatgaaagagataatattctaaaagagaga 11927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 548
Target Start/End: Complemental strand, 36866177 - 36866091
Alignment:
Q  462 tctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca 548  Q
    ||||||||||||| | |||||| ||| | |||||||||||||||||| |||||||  || |||| || | |||||||||||||||||    
T  36866177 tctctagatccttcttgagagcctgactgatcacctaatataacttgaacttatatcattctaacgggcatatcttagatcattaca 36866091  T

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Target: scaffold0332 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 12174 - 12116
Alignment:
Q  279 tgttatggacaacttttgggttgtttataaatgaaagagatgatattctaaaagagaga 337  Q
    ||||||| ||||||||| ||||||| |||||||||  |||| |||||||||||||||||    
T  12174 tgttatgaacaactttttggttgttcataaatgaagaagataatattctaaaagagaga 12116  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 1825938 - 1825865
Alignment:
Q  419 ttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcat 492  Q
    ||||||||||  |||| |||  ||||||||||||||| ||||||||||||||| || |||| ||||||| ||||    
T  1825938 ttatttatagcattgacatttcaatgactcatcacaaaggatctctctagatcattctagaaagcatgactcat 1825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 24899380 - 24899322
Alignment:
Q  419 ttatttatagttttgatattctaatgactcatcacaatggatctctctagatcctttta 477  Q
    ||||||||||| |||| |||  |||||||| ||||||  ||||||||||||||||||||    
T  24899380 ttatttatagtattgacatttcaatgactcgtcacaaatgatctctctagatcctttta 24899322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 474
Target Start/End: Original strand, 14271045 - 14271078
Alignment:
Q  441 aatgactcatcacaatggatctctctagatcctt 474  Q
    |||||||||||| |||||||||||||||||||||    
T  14271045 aatgactcatcataatggatctctctagatcctt 14271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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