View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_52 (Length: 258)
Name: NF2662_high_52
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 35382387 - 35382195
Alignment:
| Q |
11 |
cagagacattaaaaactaacaagacaagatgagagggactaaacaaagtacctatgatgttttcattggagggattgattattggaatccttttgttgag |
110 |
Q |
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| T |
35382387 |
cagaaacattaaaaactaacaagacaagatgacagggactaaacaaaggacctatgatgttttcattggagggattgattattggaatccttttgttgag |
35382288 |
T |
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| Q |
111 |
gataggagctctccactctccatctatgaataattctctacttgctactgttgtcgccattttctcctctctgtcacgcactgtaagcttgtg |
203 |
Q |
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| T |
35382287 |
gataggagctctccactctccatctatgaataattctctacttgctactgttgtcgccattttctcctctctgtcacgcactgttagcttgtg |
35382195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 35364707 - 35364911
Alignment:
| Q |
39 |
atgagagggactaaacaaagtacctatgatgttttcattggagggattgattattggaatccttttgttgaggataggagctctccactctccatctatg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35364707 |
atgagagggactaaacaaagtacctatgatgttttcattggagggattgattattggaatccttttgttgagtataggagctttccactctccatctatg |
35364806 |
T |
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| Q |
139 |
aataattctctacttgctactgttgtcgccattttctcctctctgtcacgcactgtaagcttgtgtatatgtttcttctctttttcaaggattggatcaa |
238 |
Q |
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| T |
35364807 |
aataattgtctacttgctactgctattgccatattttcctctctgtcacgcactgttagcttgtgtatatgtttcttctctttttcaaggattggatcaa |
35364906 |
T |
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| Q |
239 |
caatg |
243 |
Q |
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||||| |
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| T |
35364907 |
caatg |
35364911 |
T |
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