View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_67 (Length: 233)
Name: NF2662_high_67
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 10252608 - 10252809
Alignment:
| Q |
18 |
aaataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttctctc--gt |
115 |
Q |
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| T |
10252608 |
aaataattttatcagaaggcacattcttaatcataatgttcaactttgtgtaggcttttgtggtataatgtaagatatagacgatctatttctctcttgt |
10252707 |
T |
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| Q |
116 |
gannnnnnnnnnnnnnnnnagattggtatctataattggctcggctttactatggtacatccagaacatctgaattacttttcaactcatatggttaact |
215 |
Q |
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| T |
10252708 |
gatttttttgaaattttttagattggtatctataattggctcggctttactatggtacatccagaacatccgaataacttttcaactcatatggttaact |
10252807 |
T |
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| Q |
216 |
tg |
217 |
Q |
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|| |
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| T |
10252808 |
tg |
10252809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 6356035 - 6356085
Alignment:
| Q |
18 |
aaataattttatcagaaggcacattcttcatcataatgttcaactttgtgt |
68 |
Q |
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| T |
6356035 |
aaataatttaatcagaagacatattcttcattataatgctcaactttgtgt |
6356085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 40737612 - 40737517
Alignment:
| Q |
22 |
aattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttctctcgtga |
117 |
Q |
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| T |
40737612 |
aatttaataagaaggcacattcttcatcataatgctcaactttgtgtgggtggctatgatgtaatggaagatatagaccatctatttctctcgtga |
40737517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 40737499 - 40737451
Alignment:
| Q |
136 |
gattggtatctataattggctcggctttactatggtacatccagaacat |
184 |
Q |
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| T |
40737499 |
gattggtatctctaattggcttggctttactacggtgcatccaaaacat |
40737451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 30787996 - 30787918
Alignment:
| Q |
20 |
ataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatataga |
98 |
Q |
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| T |
30787996 |
ataatttaatcagaaggcacattcttcattataatgttcaactttgtgtgggtagctgtggtataatggaagatttaga |
30787918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 23912578 - 23912668
Alignment:
| Q |
20 |
ataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttct |
110 |
Q |
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| T |
23912578 |
ataatttaattagaaggcacattcttcatcataatgctcaactttgtgtgtgtggttgtgttataatggaagatataaaccatatatttct |
23912668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 26625238 - 26625315
Alignment:
| Q |
22 |
aattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagac |
99 |
Q |
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||||| |||| |||||| |||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
26625238 |
aatttaatcataaggcatattcttcatcataatgctcaactttgtgttgctggttgtggtataatggaagatatagac |
26625315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42689064 - 42689108
Alignment:
| Q |
18 |
aaataattttatcagaaggcacattcttcatcataatgttcaact |
62 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
42689064 |
aaataatttaatgagaaggcacattcttcatcataatgttcaact |
42689108 |
T |
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