View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_high_7 (Length: 759)
Name: NF2662_high_7
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 368 - 749
Target Start/End: Complemental strand, 40245546 - 40245165
Alignment:
| Q |
368 |
tacattaatgttttccaattgtgggactataagtaannnnnnngtcatactaatgattgactattcctattatattggttgaccaaaagaacatatatag |
467 |
Q |
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| T |
40245546 |
tacattaatgttttccaattgtgggactattagtaatttttttgtcatactaatgattgactattcctattatattggttgaccaaaagaacatatatag |
40245447 |
T |
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| Q |
468 |
tggctataagatgtcccaagtataatataaatcttcgaaaccaattaagttaactaaattacgtatatcatataacgatccttcacaaaattagtttagt |
567 |
Q |
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| T |
40245446 |
tggctataagatgtcccaagtataatataactcttcgaaaccaattaagttaactaaattacgtatatcatataacgatccttcacaaaattagtttagt |
40245347 |
T |
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| Q |
568 |
tctttcttttagcaatgtttttacaatgaattcaatattaaacttgtttttcacatcaccggtgagatggagcagtgacatttaccatacaatgtatatc |
667 |
Q |
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| T |
40245346 |
tctttcttttagcaatgtttttacaatgaattcaatattaaacttgtttttcacatcaccggtgagatggagcagagacatttaccatacaatgtatatc |
40245247 |
T |
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| Q |
668 |
atgtaatgatccttcacaaatttagttctttcttttagcttttaagtgcatataatatgatatgattttatgtttgtttctt |
749 |
Q |
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| T |
40245246 |
atgtaatgatccttcacaaatttagttctttcttttagcttttaagtgcatataatatgatatgattttatgtttgtttctt |
40245165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 40245575 - 40245533
Alignment:
| Q |
326 |
aaattaatatttttgagtgaacatatttatacattaatgtttt |
368 |
Q |
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| T |
40245575 |
aaattaatatttttgagtgaacatatttatacattaatgtttt |
40245533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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