View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_high_73 (Length: 205)

Name: NF2662_high_73
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_high_73
NF2662_high_73
[»] chr8 (1 HSPs)
chr8 (20-195)||(3498609-3498785)
[»] chr6 (4 HSPs)
chr6 (88-195)||(7054704-7054811)
chr6 (98-174)||(15121353-15121429)
chr6 (20-83)||(22957804-22957868)
chr6 (20-83)||(23830524-23830588)
[»] chr7 (2 HSPs)
chr7 (88-195)||(29675975-29676084)
chr7 (104-139)||(32517389-32517424)
[»] chr3 (3 HSPs)
chr3 (88-187)||(53944675-53944773)
chr3 (63-139)||(11458388-11458466)
chr3 (106-134)||(3470090-3470118)
[»] chr2 (4 HSPs)
chr2 (50-87)||(663103-663140)
chr2 (106-139)||(40113677-40113710)
chr2 (63-91)||(23888188-23888216)
chr2 (63-91)||(23892264-23892292)
[»] chr1 (1 HSPs)
chr1 (50-91)||(9764746-9764788)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 3498609 - 3498785
Alignment:
Q  20 attcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgataccaattgaagaatctaatactcagccatagatcaa 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3498609 attcttatccaaccaaaatagggttcatacgtgatagccataattgtatctatttggctctgataccaattgaagaatctaatactcaaccatagatcaa 3498708  T
Q  119 tagatacaagttatagcatataattagtagcaaaaaataaataataaattgtgtaccttatataattggttgatgat 195  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3498709 tagatacaagttatagcatataattagtagaaaaaaagaaataataaattgtgtaccttatataattggttgatgat 3498785  T

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Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 7054704 - 7054811
Alignment:
Q  88 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtagcaaaaaataaataataaattgtgtaccttatataattgg 187  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||| ||   |||| ||||||||||||||||||||||||    
T  7054704 ttgaagaatctaatactcagtcatagatgaatagatacaaattatagcatataattagtagtaaagaaaggataagaaattgtgtaccttatataattgg 7054803  T
Q  188 ttgatgat 195  Q
    ||| ||||    
T  7054804 ttggtgat 7054811  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 15121353 - 15121429
Alignment:
Q  98 taatactcagccatagatcaatagatacaagttatagcatataattagtagcaaaaaataaataataaattgtgtac 174  Q
    |||||||||| ||||||| ||||||||||| ||||| ||| |||||||||  ||| ||  ||||| |||||||||||    
T  15121353 taatactcagtcatagataaatagatacaaattataacatgtaattagtaataaagaaggaataaaaaattgtgtac 15121429  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 22957804 - 22957868
Alignment:
Q  20 attcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 83  Q
    ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  22957804 attctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 22957868  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 23830588 - 23830524
Alignment:
Q  20 attcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 83  Q
    ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  23830588 attctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 23830524  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 29675975 - 29676084
Alignment:
Q  88 ttgaagaatctaatactcagccatagatc--aatagatacaagttatagcatataattagtagcaaaaaataaataataaattgtgtaccttatataatt 185  Q
    ||||||||||||||||| || ||||||||  ||||||||||| |||||||||||||||||||| ||| ||   |||| ||||||||||||||||||||||    
T  29675975 ttgaagaatctaatacttagtcatagatctcaatagatacaaattatagcatataattagtagtaaagaaaggataagaaattgtgtaccttatataatt 29676074  T
Q  186 ggttgatgat 195  Q
    ||||| ||||    
T  29676075 ggttggtgat 29676084  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 32517424 - 32517389
Alignment:
Q  104 tcagccatagatcaatagatacaagttatagcatat 139  Q
    |||||||| |||||||||||||||||||||||||||    
T  32517424 tcagccatggatcaatagatacaagttatagcatat 32517389  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 53944675 - 53944773
Alignment:
Q  88 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtagcaaaaaataaataataaattgtgtaccttatataattgg 187  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||| |||| ||||||||||||||||  |||||  |||| ||||||||||||||||||    
T  53944675 ttgaagaatctaatgctcagccatagatcaatatatacaaatcataacatagaattagtagcaaaaaa-gaataaggaattatgtaccttatataattgg 53944773  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 11458466 - 11458388
Alignment:
Q  63 tgtatctatttggctctgataccaattgaagaa---tctaatactcagccatagatcaatagatacaagttatagcatat 139  Q
    |||||||||||||||||||||||||||||  ||   | ||| ||| ||||||||||| |||||||||| ||||| |||||    
T  11458466 tgtatctatttggctctgataccaattgataaaagttttaacacttagccatagatc-atagatacaaattataacatat 11458388  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 3470118 - 3470090
Alignment:
Q  106 agccatagatcaatagatacaagttatag 134  Q
    |||||||||||||||||||||||||||||    
T  3470118 agccatagatcaatagatacaagttatag 3470090  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 663140 - 663103
Alignment:
Q  50 tgatagccataattgtatctatttggctctgataccaa 87  Q
    |||||||||||| |||||||||||||||||||||||||    
T  663140 tgatagccataaatgtatctatttggctctgataccaa 663103  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 40113710 - 40113677
Alignment:
Q  106 agccatagatcaatagatacaagttatagcatat 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  40113710 agccataaatcaatagatacaagttatagcatat 40113677  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 23888188 - 23888216
Alignment:
Q  63 tgtatctatttggctctgataccaattga 91  Q
    |||||||||||||||||||||||||||||    
T  23888188 tgtatctatttggctctgataccaattga 23888216  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 23892264 - 23892292
Alignment:
Q  63 tgtatctatttggctctgataccaattga 91  Q
    |||||||||||||||||||||||||||||    
T  23892264 tgtatctatttggctctgataccaattga 23892292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 9764746 - 9764788
Alignment:
Q  50 tgatagccataa-ttgtatctatttggctctgataccaattga 91  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9764746 tgatagccataaattgtatctaattggctctgataccaattga 9764788  T

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