View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_1 (Length: 1174)
Name: NF2662_low_1
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 1106; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1106; E-Value: 0
Query Start/End: Original strand, 16 - 1162
Target Start/End: Original strand, 42521308 - 42522454
Alignment:
| Q |
16 |
tcagggacaacactcaatcttggaactcttcctgttgctattggtctttatggttactgttattctggacatgccgtgttcccaaatatttatacatcaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521308 |
tcagggacaacactcaatcttggaactcttcctgttgctattggtctttatggttactgttattctggacatgccgtgttcccaaatatttatacatcaa |
42521407 |
T |
|
| Q |
116 |
tggcaaaaccaaaccaattccctgcagtacttgtagcatggtacaccaaagatcaatttgagtcattgtttgtagttctgaatgaatgacgctagatttt |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
42521408 |
tggcaaaaccaaaccaattccctgcagtacttgtagcatggtacaccaaagatcaatttgagtcattgtttatagttctgaatgaatgactctagatttt |
42521507 |
T |
|
| Q |
216 |
gaatatatgatgttacataagnnnnnnnattttctaccgaagaataattctctttctgaatctatctaatacaatgtatcattttttctctctctcgtag |
315 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42521508 |
gaatatatgatgttacataagtttttttattttctaccgaagaataattctctttctgaatctatctaatacaatgtataattttttctctctctcgtag |
42521607 |
T |
|
| Q |
316 |
tttcggagtttgtaccttactatatgctggtggtgctgttatgggatacaaaatgtttggagaagatacactctctcaattcacccttaacctgcctcaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521608 |
tttcggagtttgtaccttactatatgctggtggtgctgttatgggatacaaaatgtttggagaagatacactctctcaattcacccttaacctgcctcaa |
42521707 |
T |
|
| Q |
416 |
gacttggttgcaaccaagattgctgtctggactacggtataccgattctacatttaattgcagatattttcttagcagattataccatgacatataaacc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521708 |
gacttggttgcaaccaagattgctgtctggactacggtataccgattctacatttaattgcagatattttcttagcagattataccatgacatataaacc |
42521807 |
T |
|
| Q |
516 |
atataaatttctaacattattgtctgctacttttatttttgcaggtggttaatccatttaccaaatatcctttatatgcgtgcatgcatttagatggaaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521808 |
atataaatttctaacattattgtctgctacttttatttttgcaggtggttaatccatttaccaaatatcctttatatgcgtgcatgcatttagatggaaa |
42521907 |
T |
|
| Q |
616 |
agattattcatcataaagaataattttgtttccacactaaaaaagtacttcaagttacatacaatatttgaactgagattttatgacatgtcattttctc |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521908 |
agattattcatcataaagaataattttgtttccacactaaaaaagtacttcaagttacatacaatatttgaactgagattttatgacatgtcattttctc |
42522007 |
T |
|
| Q |
716 |
ttgcattctcttcatatagtattcttagtttcttacactgcagatgatgaaagatgatttttcttaactagaatcacgtatgcattgactatatctccag |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42522008 |
ttgcattctcttcatatagtattcttagtttcttacactgcagatgatgaaagattatttttcttaactagaatcacgtatgcattgactatatctccag |
42522107 |
T |
|
| Q |
816 |
tggcaatgagtcttgaagagttgataccagcaaaccatgccaagtcttacctattttccattttcatcagaacaggccttgtattttctacccttgttat |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42522108 |
tggcaatgagtcttgaagagttgataccagcaaaccatgccaagtcttacctattttccattttcatcagaacaggccttgtattttctacccttgttat |
42522207 |
T |
|
| Q |
916 |
tggtctctcagttcccttttttggtgagtcttaatcaatgagttgtatgatataattaagataatcaattgcattagtttcttaatcaatcaatcattgt |
1015 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42522208 |
tggtctctcagttcccttttttggtgagtcttaatcaatgagttgtatgatataattaagataaccaattgcattagtttcttaatcaatcaatcattgt |
42522307 |
T |
|
| Q |
1016 |
aatgtgacatagttgcactatgctatggcaaattggcaataacatgtctaattattctttgcaggtttggtgatgtccttgattggatcattacttacaa |
1115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42522308 |
aatgtgacatagttgcactatgctatggcaaattggcaataacatgtctaattattctttgcaggtttggtgatgtccttgattggatcattacttacaa |
42522407 |
T |
|
| Q |
1116 |
tgcttgtagtaagtttccttcagtttttatattattgctcctagaat |
1162 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42522408 |
tgcttgtagtaagtttccttcagtttttatattattgctcctagaat |
42522454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 19240925 - 19240886
Alignment:
| Q |
552 |
ttttgcaggtggttaatccatttaccaaatatcctttata |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19240925 |
ttttgcaggtggttaatccatttaccaaatatcctttata |
19240886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 455
Target Start/End: Complemental strand, 19241128 - 19241023
Alignment:
| Q |
350 |
gctgttatgggatacaaaatgtttggagaagatacactctctcaattcacccttaacctgcctcaagacttggttgcaaccaagattgctgtctggacta |
449 |
Q |
| |
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|||||| ||||||||| ||||||||||||| |||| || ||||| | || |||||| |||||| || || || || ||||||||||||| ||||||| |
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| T |
19241128 |
gctgttgtgggatacacaatgtttggagaaaatacgctgtctcagtatactcttaacatgcctcgaggattagtagcctccaagattgctgtgtggacta |
19241029 |
T |
|
| Q |
450 |
cggtat |
455 |
Q |
| |
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|||||| |
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| T |
19241028 |
cggtat |
19241023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1073 - 1137
Target Start/End: Complemental strand, 19240333 - 19240269
Alignment:
| Q |
1073 |
tttgcaggtttggtgatgtccttgattggatcattacttacaatgcttgtagtaagtttccttca |
1137 |
Q |
| |
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|||||||||||||| ||||| || |||||||| || || |||||| |||| |||||||||||||| |
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| T |
19240333 |
tttgcaggtttggtaatgtcattaattggatccttgctcacaatgtttgttgtaagtttccttca |
19240269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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