View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_10 (Length: 628)
Name: NF2662_low_10
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 12 - 613
Target Start/End: Original strand, 32902713 - 32903312
Alignment:
| Q |
12 |
atgaacaactgtatgtgtgaaagtgaatttagacaaaatataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaag |
111 |
Q |
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| T |
32902713 |
atgaacaactgtatgtgtgaaagtgaatttagacaaaatataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaag |
32902812 |
T |
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| Q |
112 |
aaatttttcattcaatttgtagaagtcttaggagagttgataatatgattatcttcaagactatagatctcttcctccaaactatcataaaagaacgtcg |
211 |
Q |
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| T |
32902813 |
aaatttttcattcaatttgtagaagtcttaggagagttgataatatgattatcttcaagactatagatctcttcccccaaactatcataaaagaacgtcg |
32902912 |
T |
|
| Q |
212 |
tcttcgcttcaagttgctcaacatctaggttcaaattagagactaattcaaacacagctcaaatagaaatcatctttacccatgagagattcttttcaaa |
311 |
Q |
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| T |
32902913 |
tcttcgcttcaagttgctcaacatctaggttcaaattagagactaattcaaacacagctcaaatagaaatcatctttacccatgagagattcttttcaaa |
32903012 |
T |
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| Q |
312 |
atcaatatgcatgcttcccctaattaaattctttcacaatcaatatttgattgggagttattttgatcatatgcaattattatgtataaccatttgttcc |
411 |
Q |
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| T |
32903013 |
atcaatatgcatgcttcccctaattaaattctttcacaatcaatatttgattgggagttattttgatcatatgcaattattatgtataaccatttgttcc |
32903112 |
T |
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| Q |
412 |
tct-nnnnnnntgtatacccatttgcgagtgtttttctcccccaacaagtccaatcaaactcccatatcacttgttagattaaaatccaggggacaacaa |
510 |
Q |
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| T |
32903113 |
tctaaaaaaaatgtatacccatttgcgagtgtttttctcccccaccaagtccaatcaaactccgatatcacttgttag---aaaatccagggggcaacaa |
32903209 |
T |
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| Q |
511 |
cgaatcaatgatccaatactaagagagacgaagacaccacatctcgagtcaaaaccttaagacattgaaaatatatgtcacattttttatatatcaaacg |
610 |
Q |
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| T |
32903210 |
cgaatcaatgatccaatactacgagagacgaagacaccatatctcgagttaaaaccttaagacactgaaaatatatgtcacattttttatatatcaaacg |
32903309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 605
Target Start/End: Complemental strand, 943500 - 943455
Alignment:
| Q |
560 |
caaaaccttaagacattgaaaatatatgtcacattttttatatatc |
605 |
Q |
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| T |
943500 |
caaaatcttaagatattgaaaatatgagtcacattttttatatatc |
943455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 8228385 - 8228344
Alignment:
| Q |
567 |
ttaagacattgaaaatatatgtcacattttttatatatcaaa |
608 |
Q |
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| T |
8228385 |
ttaaggcattgaaaatatatgtcacatcttttataaatcaaa |
8228344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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