View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_12 (Length: 559)
Name: NF2662_low_12
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 135 - 545
Target Start/End: Original strand, 45032355 - 45032760
Alignment:
| Q |
135 |
gctgttgcgattttcatggatgatcctcactgtgtgcaggtggctgttagacgtgattcagtgtctcatgacggtgattttgaggcttctgtatgctcaa |
234 |
Q |
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| T |
45032355 |
gctgttgctattttcatggatgatcctcactgtgtgcaggtggctgttaggcgtgattcagtgtg-------ggtgattttgaggcttgtgtatgctcaa |
45032447 |
T |
|
| Q |
235 |
ctaggcttagaaaggttctgttagtatgacatttatatggttgttagtaacattgctttctttttccttggatgcatattttagcaccagaattttattt |
334 |
Q |
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| T |
45032448 |
ctaggcttagaaatgttccgttagtatgacatttatatggctgttggtaacattgctttctttttccttggatgcatattttagcaccagaattttattt |
45032547 |
T |
|
| Q |
335 |
gggtcaattgtgataggcctttttcttgggcactatggtgtgtaagtgttccgtatatatgcggcaccttttgtatgtcccgcatttattgtttttatcc |
434 |
Q |
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| T |
45032548 |
gggtcaattgtgataggcctttttcttgggcactatggtgtgtaaatgttccgtatatatgcggcaccttttgtatatcccgcatttattgtttttatcc |
45032647 |
T |
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| Q |
435 |
gcgagggttacagttttttgtacaactcgacgtgaataaattttagctgattc--nnnnnnnntgtaattgtttttatttttgtacactgcctagcaaat |
532 |
Q |
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| T |
45032648 |
gcgagggttatagttttttgtacaactcgacgtgaataaattttagctgattcaaaaaaaaaatgtaattgtttttatttttgtacactgcctagcaaat |
45032747 |
T |
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| Q |
533 |
gaaaggttgattt |
545 |
Q |
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| T |
45032748 |
gaaaggttgattt |
45032760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 43059328 - 43059398
Alignment:
| Q |
12 |
acagaagaaaaatactcaagattagaaggaagataacaatttagcatacatgaagaaggaatgcaaactgg |
82 |
Q |
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| T |
43059328 |
acagaagactaacactcaagattagaaggaggctaacaattcagcatacatgaagaaggaatgcaaactgg |
43059398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 478
Target Start/End: Complemental strand, 4544006 - 4543879
Alignment:
| Q |
351 |
gcctttttcttgggcactatggtgtgtaagtgttccgtatatatgcggcaccttttgtatgtcccgcatttattgtttttatccgcgagggttacagttt |
450 |
Q |
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| T |
4544006 |
gcctttttcttgggcatggtggtgttttggtgttccgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctt |
4543907 |
T |
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| Q |
451 |
tttgtacaactcgacgtgaataaatttt |
478 |
Q |
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| T |
4543906 |
tttgtacaactcaacatgaataaatttt |
4543879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 473
Target Start/End: Original strand, 19873482 - 19873565
Alignment:
| Q |
390 |
tatatgcggcaccttttgtatgtcccgcatttatt-gtttttatccgcgagggttacagttttttgtacaactcgacgtgaataa |
473 |
Q |
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| T |
19873482 |
tatatgcggtaccttttgtatgttccgc-tttattcgtttttatccgcgagcggtaccgcttcttgtacaactcgtcgtgaataa |
19873565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 4357422 - 4357471
Alignment:
| Q |
496 |
tgtaattgtttttatttttgtacactgcctagcaaatgaaaggttgattt |
545 |
Q |
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| T |
4357422 |
tgtaattgtttttatttttgtagattgtctagctaatgaaaggtttattt |
4357471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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